Ulisses de Mendonça Braga Neto

Ulisses M. Braga-Neto possui Graduação em Engenharia Elétrica pela Universidade Federal de Pernambuco (1992), Mestrado em Engenharia Elétrica pela Universidade Estadual de Campinas (1994), Mestrado em Electrical and Computer Engineering - Johns Hopkins University (1998), Mestrado em Mathematical Sciences - Johns Hopkins University (1998) e Doutorado em Electrical and Computer Engineering - Johns Hopkins University (2001). Ele ocupou posições de pós-doutorado no Centro de Câncer Anderson Anderson da University of Texas, Houston, TX (2002-2004), e na Fundação Oswaldo Cruz, Recife, Brasil (2004-2006). Atualmente ele é Professor Associado no Departamento de Engenharia Elétrica e de Computação e membro do Centro de Engenharia de Bioinformática e Sistemas Genômicos da Universidade Texas A & M, College Station, TX, EUA. Seus interesses de pesquisa incluem reconhecimento de padrões e processamento estatístico de sinais. Ele é o autor do livro de texto Estimativa de Erros para Reconhecimento de Padrões (IEEE-Wiley, 2015) e recebeu o Prêmio NSF CAREER por seu trabalho nessa área. Tem experiência na área de Biologia Computacional, com ênfase em Genômica, Protômica e Imunômica, atuando principalmente nos seguintes temas: análise estatística de dados de microarranjos e espectometria de massa, reconhecimento estatístico de padrões, e estimação de erro de classificação.

Informações coletadas do Lattes em 17/10/2022

Acadêmico

Formação acadêmica

Doutorado em Electrical Engineering

1996 - 2001

Johns Hopkins University
Título: Connectivity in Image Processing and Analysis: Theory, Multiscale Extensions and Applications
Orientador: John Goutsias
Bolsista do(a): Conselho Nacional de Desenvolvimento Científico e Tecnológico, CNPq, Brasil. Palavras-chave: Connectivity; Mathematical Morphology; Multiscale Analysis; Fuzzy connectivity; Complete Lattices; Image Analysis. Grande área: EngenhariasGrande Área: Ciências Exatas e da Terra / Área: Ciência da Computação / Subárea: Metodologia e Técnicas da Computação / Especialidade: Processamento Gráfico (Graphics). Setores de atividade: Saúde Humana; Aeronáutica e Espaço.

Mestrado em Electrical Engineering

1996 - 1998

Johns Hopkins University
Título: Mestrado sem dissertação,Ano de Obtenção: 1998
Orientador: John Goutsias
Bolsista do(a): Conselho Nacional de Desenvolvimento Científico e Tecnológico, CNPq, Brasil. Grande área: Engenharias

Mestrado em Mathematical Sciences

1996 - 1998

Mestrado em Engenharia Elétrica

1992 - 1994

Universidade Estadual de Campinas
Título: Reconstrução Volumétrica e Análise de Imagens Tridimensionais por Morfologia Matemática,Ano de Obtenção: 1994
Roberto de Alencar Lotufo.Bolsista do(a): Conselho Nacional de Desenvolvimento Científico e Tecnológico, CNPq, Brasil. Palavras-chave: Morfologia Matemática; Processamento e Análise de Imagens; Reconstrução Tridimensional.Grande área: EngenhariasSetores de atividade: Recursos Minerais.

Graduação em Engenharia Elétrica

1988 - 1992

Universidade Federal de Pernambuco

Pós-doutorado

2002 - 2004

Pós-Doutorado. , Texas A&M University System, TAMUS, Estados Unidos. , Bolsista do(a): National Cancer Institute, NCI, Estados Unidos. , Grande área: Engenharias, Grande Área: Engenharias / Área: Engenharia Elétrica / Subárea: Telecomunicações.

2001 - 2002

Pós-Doutorado. , Johns Hopkins University, JHU, Estados Unidos. , Bolsista do(a): Office Of Naval Research, ONR, Estados Unidos. , Grande área: Engenharias

Idiomas

Inglês

Compreende Bem, Fala Bem, Lê Bem, Escreve Bem.

Espanhol

Compreende Razoavelmente, Fala Pouco, Lê Bem, Escreve Pouco.

Português

Compreende Bem, Fala Bem, Lê Bem, Escreve Bem.

Francês

Compreende Pouco, Fala Pouco, Lê Razoavelmente, Escreve Pouco.

Alemão

Compreende Pouco, Fala Pouco, Lê Razoavelmente, Escreve Pouco.

Áreas de atuação

Grande área: Engenharias / Área: Engenharia Elétrica / Subárea: Processamento de Sinais/Especialidade: Processamento de Sinais Genômicos.

Grande área: Ciências Biológicas / Área: Genética / Subárea: Genética Humana e Médica/Especialidade: Genômica Funcional.

Grande área: Ciências Biológicas / Área: Imunologia / Subárea: Imunologia Aplicada/Especialidade: Imunômica.

Grande área: Ciências Exatas e da Terra / Área: Probabilidade e Estatística / Subárea: Probabilidade e Estatística Aplicadas.

Grande área: Ciências Exatas e da Terra / Área: Probabilidade e Estatística / Subárea: Reconhecimento Estatístico de Padrões.

Participação em eventos

First Symposium on Human Immunomics.Progress Report on Functional Genomics Study of Dengue Fever. 2005. (Seminário).

II International Conference on Bioinfoirmatics and Computational Biology. Mesa Redonda em Redes Genéticas Regulatórias. 2004. (Congresso).

First SIAM Conference on Imaging Science. Palestra 'Flat Grayscale Connectivity'. 2002. (Congresso).

Participação em bancas

Aluno: André Vital Saúde

COUPRIE, M.;LOTUFO, R A; BANON, G.J.F.;BRAGA-NETO, Ulisses de Mendonça; TOZZI, C.; WU, SHIN-TING. Esqueletos Euclideanos Discretos em Resolução Aumentada. 2006. Tese (Doutorado em Engenharia Elétrica) - Universidade Estadual de Campinas.

Aluno: Arley Ferreira de Souza

BRAGA-NETO, Ulisses de Mendonça; G J F Banon;LOTUFO, R A. Expansão por Dilatação e Por Erosão Em Vista À Extração de Esqueletos e Segmentação de Imagens. 2005. Tese (Doutorado em Computação Aplicada) - Instituto Nacional de Pesquisas Espaciais.

Orientou

Sambandh Dal

-; Início: 2019; Dissertação (Mestrado profissional em Master of Science in Electrical Engineering) - Texas A & M University; (Orientador);

Kashyap Nagaraja

-; Início: 2018; Dissertação (Mestrado profissional em Master of Science in Electrical Engineering) - Texas A & M University; (Orientador);

Caio Davi

-; Início: 2019; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University; (Orientador);

Yukun Tan

-; Início: 2017; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University; (Orientador);

Levi D

McClenny; -; Início: 2017; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University; (Orientador);

Parisa Ghane

-; Início: 2016; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University; (Orientador);

Alireza Karbalayghareh

-; Início: 2015; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University; (Orientador);

Shuilian Xie

-; Início: 2015; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University; (Orientador);

Mahdi Imani

-; Início: 2014; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University; (Orientador);

Ratanond Koonchanok

?Computational Tool For Applications Of Sparse Canonical Correlation Analysis On Biological Data?; 2016; Dissertação (Mestrado em Master of Science in Electrical Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Levi McClenny

?Optimal Estimation of Partially Observed Boolean Dynamical Systems in the Presence of Correlated Observation Noise; ?; 2015; Dissertação (Mestrado em Master of Science in Electrical Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Emre Arslan

?Analyzing High-Dimensional Biological Data Using Novel Bayesian Rank-Based Techniques; ?; 2014; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Arghavan Bahadorinejad

: "Fault Detection and Diagnosis in Gene Regulatory Network and Optimal Bayesian Classification of Metagenomic Data"; 2013; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Youting Sun

" Model-based Biomarker Detection and Systematic Analysis in Translational Science; ?; 2012; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Xingde Jiang

?Naive Bayes Bolstered Error Estimation, Model Selection and Identification of Stress Induced Pathways in Bananas; ?; 2012; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Esmaeil Atashpazgargari

?Biomarker Discovery and Validation for Proteomics and Genomics: Modeling and Systematic Analysis; ?; 2011; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Thang Vu

"The Bootstrap in Supervised Learning and Its Applications in Genomics/Proteomics; "; 2011; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Amin Zollanvari

Analytical Study of Performance of Error Estimators for Linear Discriminant Analysis with Applications in Genomics; ; 2010; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Ting Chen

"Estimation and Detection of Multivariate Gene Regulatory Relationships; ?; 2009; Tese (Doutorado em Ph; D Electrical and Computer Engineering) - Texas A & M University,; Orientador: Ulisses de Mendonça Braga Neto;

Ting Chen

2013; Texas A & M University,; Ulisses de Mendonça Braga Neto;

Upamanyu Banerjee

(no-thesis option); 2015; Orientação de outra natureza - Texas A & M University; Orientador: Ulisses de Mendonça Braga Neto;

Produções bibliográficas

DAVI, CAIO CESAR MEDEIROS ; PASTOR, ANDRE ; OLIVEIRA, THIEGO ; LIMA NETO, FERNANDO BUARQUE ; Braga-Neto, Ulisses ; BIGHAM, ABIGAIL ; BAMSHAD, MICHAEL ; Marques, Ernesto T. A. ; Acioli-Santos, Bartolomeu . Severe Dengue Prognosis Using Human Genome Data and Machine Learning. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING , v. -, p. 1-1, 2019.
KARBALAYGHAREH, ALIREZA ; Braga-Neto, Ulisses ; Dougherty, Edward R. . Classification of Single-Cell Gene Expression Trajectories from Incomplete and Noisy Data. IEEE-ACM Transactions on Computational Biology and Bioinformatics , v. 16, p. 193-207, 2019.
IMANI, MAHDI ; Braga-Neto, Ulisses M. . Point-Based Methodology to Monitor and Control Gene Regulatory Networks via Noisy Measurements. IEEE Transactions on Control Systems Technology , v. 27, p. 1023-1035, 2019.
BAHADORINEJAD, ARGHAVAN ; IMANI, MAHDI ; Braga-Neto, Ulisses . Adaptive Particle Filtering for Fault Detection in Partially-Observed Boolean Dynamical Systems. IEEE-ACM Transactions on Computational Biology and Bioinformatics , v. -, p. 1-1, 2018.
IMANI, MAHDI ; Braga-Neto, Ulisses . Control of Gene Regulatory Networks using Bayesian Inverse Reinforcement Learning. IEEE-ACM Transactions on Computational Biology and Bioinformatics , v. -, p. 1-1, 2018.
IMANI, MAHDI ; Braga-Neto, Ulisses M. . Finite-horizon LQR controller for partially-observed Boolean dynamical systems. AUTOMATICA , v. 95, p. 172-179, 2018.
NAGARAJA, KASHYAP ; Braga-Neto, Ulisses . Bayesian Classification of Proteomics Biomarkers from Selected Reaction Monitoring Data using an Approximate Bayesian Computation-Markov Chain Monte Carlo Approach. CANCER INFORMATICS , v. 17, p. 117693511878692, 2018.
IMANI, MAHDI ; DEHGHANNASIRI, ROOZBEH ; BRAGA-NETO, ULISSES M ; Dougherty, Edward R . Sequential Experimental Design for Optimal Structural Intervention in Gene Regulatory Networks Based on the Mean Objective Cost of Uncertainty. CANCER INFORMATICS , v. 17, p. 117693511879024, 2018.
IMANI, MAHDI ; Braga-Neto, Ulisses M. . Control of Gene Regulatory Networks With Noisy Measurements and Uncertain Inputs. IEEE Transactions on Control of Network Systems , v. 5, p. 760-769, 2018.
IMANI, MAHDI ; Braga-Neto, Ulisses . Gene regulatory network state estimation from arbitrary correlated measurements. EURASIP Journal on Advances in Signal Processing , v. 2018, p. 22, 2018.
KARBALAYGHAREH, ALIREZA ; Braga-Neto, Ulisses ; Dougherty, Edward R. . Intrinsically Bayesian robust classifier for single-cell gene expression trajectories in gene regulatory networks. BMC Systems Biology , v. 12, p. 23, 2018.
BAHADORINEJAD, ARGHAVAN ; Braga-Neto, Ulisses M. . Optimal Fault Detection and Diagnosis in Transcriptional Circuits Using Next-Generation Sequencing. IEEE-ACM Transactions on Computational Biology and Bioinformatics , v. 15, p. 516-525, 2018.
IMANI, MAHDI ; Braga-Neto, Ulisses M. . Particle filters for partially-observed Boolean dynamical systems. AUTOMATICA , v. 87, p. 238-250, 2018.
KARBALAYGHAREH, ALIREZA ; Braga-Neto, Ulisses ; HUA, JIANPING ; DOUGHERTY, EDWARD RUSSELL . Classification of State Trajectories in Gene Regulatory Networks. IEEE-ACM Transactions on Computational Biology and Bioinformatics , v. 15, p. 68-82, 2018.
ATASHPAZ-GARGARI, ESMAEIL ; REIS, MARCELO S. ; Braga-Neto, Ulisses M. ; BARRERA, JUNIOR ; Dougherty, Edward R. . A fast Branch-and-Bound algorithm for U-curve feature selection. PATTERN RECOGNITION , v. 73, p. 172-188, 2018.
MCCLENNY, LEVI D. ; IMANI, MAHDI ; Braga-Neto, Ulisses M. . BoolFilter: an R package for estimation and identification of partially-observed Boolean dynamical systems. BMC BIOINFORMATICS , v. 18, p. 519, 2017.
RIGGS, P. K. ; TEDESCHI, L. O. ; TURNER, N. ; Braga-Neto, Ulisses ; JAYARAMAN, A. . ?The role of ?omics? technologies for livestock sustainability?. ARCHIVOS LATINOAMERICANOS DE PRODUCCIÓN ANIMAL , v. 25, p. -, 2017.
OLIVEIRA, RENATO ANTONIO DOS SANTOS ; Cordeiro, Marli Tenório ; MOURA, PATRÍCIA MUNIZ MENDES FREIRE DE ; BAPTISTA FILHO, PAULO NEVES BAPTI ; BRAGA-NETO, Ulisses de Mendonça ; MARQUES, ERNESTO TORRES DE AZEVEDO ; GIL, LAURA HELENA VEGA GONZALES . Serum cytokine/chemokine profiles in patients with dengue fever (DF) and dengue hemorrhagic fever (FHD) by using protein array. JOURNAL OF CLINICAL VIROLOGY , v. 89, p. 39-45, 2017.
IMANI, MAHDI ; Braga-Neto, Ulisses M. . Maximum-Likelihood Adaptive Filter for Partially Observed Boolean Dynamical Systems. IEEE TRANSACTIONS ON SIGNAL PROCESSING , v. 65, p. 359-371, 2017.
CHEN, TING ; Braga-Neto, Ulisses M. . Bayesian estimation of the discrete coefficient of determination. EURASIP Journal on Bioinformatics and Systems Biology (Online) , v. 2016, p. 1, 2016.
BANERJEE, UPAMANYU ; Braga-Neto, Ulisses M. . Bayesian ABC-MCMC Classification of Liquid Chromatography-Mass Spectrometry Data. CANCER INFORMATICS , v. 14s5, p. CIN.S30798, 2015.
TING CHEN ; Braga-Neto, Ulisses M. . Statistical Detection of Intrinsically Multivariate Predictive Genes. IEEE-ACM Transactions on Computational Biology and Bioinformatics , v. 12, p. 951-964, 2015.
Braga-Neto, Ulisses M. ; Zollanvari, Amin ; Dougherty, Edward R. . Cross-validation under separate sampling: strong bias and how to correct it. Bioinformatics , v. 30, p. 3349-3355, 2014.
AFSARI, BAHMAN ; Braga-Neto, Ulisses M. ; GEMAN, DONALD . Rank discriminants for predicting phenotypes from RNA expression. Annals of Applied Statistics , v. 8, p. 1469-1491, 2014.
VU, THANG ; SIMA, Chao ; BRAGA-NETO, ULISSES M ; Dougherty, Edward R . Unbiased bootstrap error estimation for linear discriminant analysis. EURASIP Journal on Bioinformatics and Systems Biology (Online) , v. 2014, p. 15, 2014.
ATASHPAZ-GARGARI, ESMAEIL ; BRAGA-NETO, ULISSES M ; Dougherty, Edward R . Modeling and systematic analysis of biomarker validation using selected reaction monitoring. EURASIP Journal on Bioinformatics and Systems Biology (Online) , v. 2014, p. 17, 2014.
CHEN, TING ; Braga-Neto, Ulisses M. . Statistical Detection of Boolean Regulatory Relationships. IEEE-ACM Transactions on Computational Biology and Bioinformatics , v. 10, p. 1-1, 2013.
CHEN, TING ; Braga-Neto, Ulisses M. . Maximum-Likelihood Estimation of the Discrete Coefficient of Determination in Stochastic Boolean Systems. IEEE Transactions on Signal Processing , v. 61, p. 3880-3894, 2013.
PASTOR, ANDRÉ F. ; RODRIGUES MOURA, LAÍS ; NETO, JOSÉ W.D. ; NASCIMENTO, EDUARDO J.M. ; Calzavara-Silva, Carlos E. ; GOMES, ANA LISA V. ; SILVA, ANA MARIA DA ; Cordeiro, Marli T. ; Braga-Neto, Ulisses ; Crovella, Sergio ; GIL, LAURA H.V.G. ; MARQUES JR., ERNESTO T.A. ; Acioli-Santos, Bartolomeu . Complement factor H gene (CFH) polymorphisms C-257T, G257A and haplotypes are associated with protection against severe dengue phenotype, possible related with high CFH expression. HUMAN IMMUNOLOGY , v. 74, p. 1225-1230, 2013.
XAVIER EURICO DE ALENCAR, LICIANA ; DE MENDONÇA BRAGA-NETO, ULISSES ; JOSÉ MOURA DO NASCIMENTO, EDUARDO ; TENÓRIO CORDEIRO, MARLI ; MARIA SILVA, ANA ; ALEXANDRE ANTUNES DE BRITO, CARLOS ; DA SILVA, MARIA DA PAZ CARVALHO ; GIL, LAURA HELENA VEGA GONZALES ; MONTENEGRO, SILVIA MARIA LUCENA ; MARQUES, ERNESTO TORRES DE AZEVEDO . HLA-B*44 Is Associated with Dengue Severity Caused by DENV-3 in a Brazilian Population. JOURNAL OF TROPICAL MEDICINE , v. 2013, p. 1-11, 2013.
Martins, David C. ; DE OLIVEIRA, EVALDO A. ; Braga-Neto, Ulisses M. ; Hashimoto, Ronaldo F. ; CESAR, ROBERTO M. . Signal propagation in Bayesian networks and its relationship with intrinsically multivariate predictive variables. INFORMATION SCIENCES , v. 225, p. 18-34, 2013.
DE MELO, ANDRÉA BARBOSA ; Nascimento, Eduardo J. M. ; Braga-Neto, Ulisses ; Dhalia, Rafael ; SILVA, ANA MARIA ; OELKE, MATHIAS ; SCHNECK, JONATHAN P. ; SIDNEY, JOHN ; SETTE, ALESSANDRO ; MONTENEGRO, SILVIA M. L. ; Marques, Ernesto T. A. . T-Cell Memory Responses Elicited by Yellow Fever Vaccine are Targeted to Overlapping Epitopes Containing Multiple HLA-I and -II Binding Motifs. PLoS Neglected Tropical Diseases , v. 7, p. e1938, 2013.
ATASHPAZ-GARGARI, ESMAEIL ; SIMA, Chao ; Braga-Neto, Ulisses M. ; Dougherty, Edward R. . Relationship between the accuracy of classifier error estimation and complexity of decision boundary. PATTERN RECOGNITION , v. 46, p. 1315-1322, 2013.
ALLEN, C. C. ; ALVES, B. R. C. ; LI, X. ; TEDESCHI, L. O. ; ZHOU, H. ; PASCHAL, J. C. ; RIGGS, P. K. ; Braga-Neto, U. M. ; KEISLER, D. H. ; WILLIAMS, G. L. ; AMSTALDEN, M. . Gene expression in the arcuate nucleus of heifers is affected by controlled intake of high- and low-concentrate diets. JOURNAL OF ANIMAL SCIENCE , v. 90, p. 2222-2232, 2012.
Zollanvari, Amin ; Braga-Neto, Ulisses ; Dougherty, Edward R. . Exact representation of the second-order moments for resubstitution and leave-one-out error estimation for linear discriminant analysis in the univariate heteroskedastic Gaussian model. PATTERN RECOGNITION , v. 45, p. 908-917, 2012.
SUN, YOUTING ; ZHANG, JIANQIU ; Braga-Neto, Ulisses ; Dougherty, Edward R. . BPDA2d-a 2D global optimization-based Bayesian peptide detection algorithm for liquid chromatograph-mass spectrometry. Bioinformatics , v. 28, p. 564-572, 2011.
WANG, YING ; GHAFFARI, NOUSHIN ; JOHNSON, CHARLES D ; BRAGA-NETO, ULISSES M ; WANG, HUI ; CHEN, RUI ; ZHOU, HUAIJUN . Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens. BMC BIOINFORMATICS , v. 12, p. S5, 2011.
MELO, A. B. ; SILVA, M.P.C. ; MAGALHAES, M. C. F. ; GIL, L.H.V.G. ; CARVALHO, E.M.F ; BARGA-NETO, U. ; BERTANI, G. R. ; MARQUES JUNIOR, E. T. A. ; CORDEIRO, M. T. . Description of a Prospective 17DD Yellow Fever Vaccine Cohort in Recife, Brazil. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE , v. 85, p. 739-747, 2011.
Zollanvari, Amin ; Braga-Neto, Ulisses M. ; Dougherty, Edward R. . Analytic Study of Performance of Error Estimators for Linear Discriminant Analysis. IEEE TRANSACTIONS ON SIGNAL PROCESSING , v. 59, p. 4238-4255, 2011.
SIMA, C. ; Braga-Neto, U. M. ; DOUGHERTY, E. R. . High-dimensional bolstered error estimation. BIOINFORMATICS , v. 27, p. 3056-3064, 2011.
R. DOUGHERTY, EDWARD ; Zollanvari, Amin ; M. BRAGA-NETO, ULISSES . The Illusion of Distribution-Free Small-Sample Classification in Genomics. CURRENT GENOMICS , v. 12, p. 333-341, 2011.
Braga-Neto, Ulisses M. ; Dougherty, Edward R. . Exact correlation between actual and estimated errors in discrete classification. Pattern Recognition Letters , v. 31, p. 407-412, 2010.
Zollanvari, Amin ; Braga-Neto, Ulisses M. ; Dougherty, Edward R. . . IEEE Transactions on Information Theory , v. 56, p. 784-804, 2010.
Dougherty, Edward R. ; SIMA, Chao ; HUA, JIANPING ; HANCZAR, B. ; Braga-Neto, U. M. . Performance of Error Estimators for Classification. Current Bioinformatics (Print) , v. 5, p. 53-67, 2010.
CHEN, TING ; Braga-Neto, Ulisses . Exact Performance of CoD Estimators in Discrete Prediction. EURASIP Journal on Advances in Signal Processing , v. 2010, p. 487893, 2010.
Vu, T. T. ; Braga-Neto, U. M. . Small-Sample Error Estimation for Bagged Classification Rules. EURASIP Journal on Advances in Signal Processing , v. 2010, p. 548906, 2010.
SUN, YOUTING ; ZHANG, JIANQIU ; BRAGA-NETO, ULISSES M ; Dougherty, Edward R . BPDA - A Bayesian peptide detection algorithm for mass spectrometry. BMC BIOINFORMATICS , v. 11, p. 490, 2010.
SUN, YOUTING ; ZHANG, JIANQIU ; BRAGA-NETO, ULISSES M ; Dougherty, Edward R . BPDA - A Bayesian peptide detection algorithm for mass spectrometry. BMC BIOINFORMATICS , v. 11, p. 490, 2010.
Cordeiro, Marli Tenório ; Braga-Neto, Ulisses ; Nogueira, Rita Maria Ribeiro ; Marques, Ernesto T. A. . Reliable Classifier to Differentiate Primary and Secondary Acute Dengue Infection Based on IgG ELISA. Plos One , v. 4, p. e4945, 2009.
Vu, T. T. ; Braga-Neto, U. M. . Is Bagging Effective in the Classification of Small-Sample Genomic and Proteomic Data?. EURASIP Journal on Bioinformatics and Systems Biology (Print) , v. 2009, p. 1-11, 2009.
Zollanvari, Amin ; Braga-Neto, Ulisses M. ; Dougherty, Edward R. . On the sampling distribution of resubstitution and leave-one-out error estimators for linear classifiers. Pattern Recognition , v. 42, p. 2705-2723, 2009.
Nascimento, Eduardo J. M. ; Silva, Ana M. ; Cordeiro, Marli T. ; Brito, Carlos A. ; Gil, Laura H. V. G. ; Braga-Neto, Ulisses ; Marques, Ernesto T. A. . Alternative Complement Pathway Deregulation Is Correlated with Dengue Severity. Plos One , v. 4, p. e6782, 2009.
Zollanvari, Amin ; Cunningham, Mary Jane ; Braga-Neto, Ulisses ; Dougherty, Edward R . Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes. BMC Bioinformatics , v. 10, p. S10, 2009.
Braga-Neto, Ulisses M. . Classification and Error Estimation for Discrete Data. Current Genomics , v. 10, p. 446-462, 2009.
Nascimento, Eduardo J. M. ; Braga-Neto, Ulisses ; Calzavara-Silva, Carlos E. ; Gomes, Ana L. V. ; Abath, Frederico G. C. ; Brito, Carlos A. A. ; Cordeiro, Marli T. ; Silva, Ana M. ; Magalhães, Cecilia ; Andrade, Raoni ; Gil, Laura H. V. G. ; Marques, Ernesto T. A. . Gene Expression Profiling during Early Acute Febrile Stage of Dengue Infection Can Predict the Disease Outcome. Plos One , v. 4, p. e7892, 2009.
Acioli-Santos, Bartolomeu ; Segat, Ludovica ; Dhalia, Rafael ; Brito, Carlos A.A. ; BRAGA-NETO, Ulisses de Mendonça ; Marques, Ernesto T.A. ; Crovella, Sergio . MBL2 Gene polymorphisms protect against development of thrombocytopenia associated with severe dengue phenotype. Human Immunology , v. 69, p. 122-128, 2008.
Martins, David C. ; Braga-Neto, Ulisses M. ; Hashimoto, Ronaldo F. ; Bittner, Michael L. ; Dougherty, Edward R. . . IEEE Journal of Selected Topics in Signal Processing , v. 2, p. 424-439, 2008.
BRAGA-NETO, Ulisses de Mendonça . Fads and Fallacies in the Name of Small-Sample Microarray Classification. IEEE Signal Processing Magazine , v. 24, p. 91-99, 2007.
DOUGHERTY, Edward Russel ; BRAGA-NETO, Ulisses de Mendonça . Epistemology of Computational Biology: Mathematical Models and Experimental Prediction as the Basis of Their Validity. Journal of Biological Systems , v. 14, p. 65-90, 2006.
XU, QIAN ; HUA, JIANPING ; BRAGA-NETO, Ulisses de Mendonça ; XIONG, ZIXIANG ; SUH, EDWARD ; DOUGHERTY, Edward Russel . Confidence Intervals for the True Classification Error Conditioned on the Estimated Error. Technology in Cancer Research and Treatment , v. 5, p. 579-590, 2006.
BRAGA-NETO, Ulisses de Mendonça ; MARQUES, Ernesto . From Functional Genomics to Functional Immunomics: New Challenges, Old Problems, Big Rewards. PLoS Computational Biology , v. 2, p. e81, 2006.
SIMA, Chao ; BRAGA-NETO, Ulisses de Mendonça ; DOUGHERTY, Edward . Superior Feature-Set Ranking for Small Samples Using Bolstered Error Estimation. Bioinformatics (Oxford) , England, v. 21, n.7, p. 1046-1054, 2005.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, John . Object-Based Image Analysis Using Multiscale Connectivity. IEEE Transactions on Pattern Analysis and Machine Intelligence , Estados Unidos, v. 27, n.6, p. 892-907, 2005.
BRAGA-NETO, Ulisses de Mendonça . Multiscale Connected Operators. Journal of Mathematical Imaging and Vision , Estados Unidos, v. 22, n.2-3, p. 199-216, 2005.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, John . Constructing Multiscale Connectivities. Computer Vision and Image Understanding , v. 99, p. 126-150, 2005.
SIMA, Chao ; S Attoor ; BRAGA-NETO, Ulisses de Mendonça ; LOWEY, J. ; SUH, E. ; DOUGHERTY, Edward . Impact of Error Estimation on Feature-Selection Algorithms. Pattern Recognition , 2005.
BRAGA-NETO, Ulisses de Mendonça ; DOUGHERTY, Edward . Exact Performance of Error Estimators for Discrete Classifiers. Pattern Recognition , 2005.
BRAGA-NETO, Ulisses de Mendonça ; DOUGHERTY, e R . Bolstered Error Estimation. Pattern Recognition , v. 37, n.6, p. 1267-1281, 2004.
BRAGA-NETO, Ulisses de Mendonça ; HASHIMOTO, R ; DOUGHERTY, e R ; NGUYEN, D ; CARROLL, R . Is Cross-Validation Better Than Resubstitution for Ranking Genes?. Bioinformatics (Oxford) , Inglaterra, v. 20, n.2, p. 253-258, 2004.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, J . Grayscale Level Connectivity: Theory and Applications. IEEE Transactions on Image Processing , Estados Unidos, v. 13, n.12, p. 1567-1580, 2004.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, J . Supremal Multiscale Signal Analysis. SIAM Journal on Mathematical Analysis , Estados Unidos, v. 36, n.1, p. 94-120, 2004.
BRAGA-NETO, Ulisses de Mendonça ; CHOUDHARY, M ; GOUTSIAS, J . Automatic Target Detection and Tracking On Forward-Looking Infrared Image Sequences Using Morphological Connected Operators. Photo Electronic Imaging , Estados Unidos, v. 13, n.4, p. 802-813, 2004.
BRAGA-NETO, Ulisses de Mendonça ; DOUGHERTY, e R . Is Cross-Validation Valid For Small-Sample Microarray Classification?. Bioinformatics (Oxford) , Inglaterra, v. 20, n.3, p. 374-380, 2004.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, J . A Theoretical Tour of Connectivity in Image Processing and Analysis. Journal of Mathematical Imaging and Vision , v. 19, n.1, p. 5-31, 2003.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, J . A Multiscale Approach to Connectivity. Computer Vision and Image Understanding , v. 89, n.1, p. 70-107, 2003.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, J . Connectivity on Complete Lattices: New Results. Computer Vision and Image Understanding , v. 85, n.1, p. 22-53, 2002.
HAN, X ; XU, C ; BRAGA-NETO, Ulisses de Mendonça ; PRINCE, J L . Topology Correction in Brain Cortex Segmentation Using a Multiscale, Graph-Based Algorithm. IEEE Transactions on Medical Imaging , v. 21, n.2, p. 109-121, 2002.
CANDEAS, A J ; BRAGA-NETO, Ulisses de Mendonça ; CARVALHO FILHO, e C B . A Mathematical Morphology Approach to the Star/Galaxy Characterization Problem. Journal of the Brazilian Computer Society , v. 3, n.3, p. 14-29, 1997.
Braga-Neto, Ulisses M. ; Dougherty, Edward R. . Error Estimation for Pattern Recognition. 1. ed. John Wiley & Sons, Inc., 2015.
DHALIA, R. ; GIL, L. ; NASCIMENTO, E. ; BRAGA-NETO, Ulisses de Mendonça ; MARQUES, Ernesto . Mapeamento de Epítopos: a Busca Racional para o Desenvolvimento. In: Eduardo Freese. (Org.). Epidemiologia, Políticas e Determinantes das Doenças Crônicas Não-Transmissíveis no Brasil. Recife, PE: Editora Universitária, 2006, v. , p. 321-340.
BRAGA-NETO, Ulisses de Mendonça ; DOUGHERTY, Edward . Classification. In: E R Dougherty; I Schmulevich; J Chen; Z J Wang. (Org.). Genomic Signal Processing and Statistics. New York, NY: Hindawi Publishing Corporation, 2005, v. 2, p. 93-128.
IMANI, M. ; GHOREISHI, S. F. ; ALLAIRE, D. ; Braga-Neto, Ulisses . ?MFBO-SSM: Multi-Fidelity Bayesian Optimization for Fast Inference in State-Space Models?. In: AAAI Conference on Artificial Intelligence (AAAI?19), 2019. AAAI Conference on Artificial Intelligence (AAAI?19), Jan 2019, 2019.
IMANI, M. ; GHOREISHI, S. F. ; Braga-Neto, Ulisses . ?Bayesian Control of Large MDPs with Unknown Dynamics in Data-Poor Environments'. In: Advances in Neural Information Processing Systems (NIPS), 2018. Advances in Neural Information Processing Systems (NIPS), Dec 2018., 2018.
DAVI, CAIO CESAR MEDEIROS ; PASTOR, ANDRE ; OLIVEIRA, THIEGO ; LIMA NETO, FERNANDO BUARQUE ; BIGHAM, ABIGAIL ; BAMSHAD, MICHAEL ; MARQUES, Ernesto ; Acioli-Santos, Bartolomeu ; Braga-Neto, Ulisses . ?Computational Intelligence applied to Human Genome Data for the Dengue Severity Prognosis?. In: Proceedings of the 11th Brazilian Symposium on Bioinformatics, 2018. Proceedings of the 11th Brazilian Symposium on Bioinformatics, BSB 2018, 2018.
TAN, Y. ; LIMA NETO, FERNANDO BUARQUE ; Braga-Neto, Ulisses . ?Inference of Gene Regulatory Networks by Maximum-Likelihood Adaptive Filtering and Discrete Fish School Search?. In: Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing (MLSP?18), 2018. Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing (MLSP?18), 2018.
HAJIRAMEZANALI, EHSAN ; IMANI, MAHDI ; Braga-Neto, Ulisses ; QIAN, XIAONING ; Dougherty, Edward R. . Scalable Optimal Bayesian Classification of Single-Cell Trajectories under Regulatory Model Uncertainty. In: the 2018 ACM International Conference, 2018, Washington. Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '18. New York: ACM Press, 2018. p. 596.
IMANI, MAHDI ; Braga-Neto, Ulisses . Optimal Control of Gene Regulatory Networks with Unknown Cost Function. In: 2018 Annual American Control Conference (ACC), 2018, Milwaukee. 2018 Annual American Control Conference (ACC), 2018. p. 3939.
IMANI, MAHDI ; Braga-Neto, Ulisses M. . Optimal finite-horizon sensor selection for Boolean Kalman Filter. In: 2017 51st Asilomar Conference on Signals, Systems, and Computers, 2017, Pacific Grove. 2017 51st Asilomar Conference on Signals, Systems, and Computers, 2017. p. 1481.
XIE, SHUILIAN ; IMANI, MAHDI ; Dougherty, Edward R. ; Braga-Neto, Ulisses M. . Nonstationary linear discriminant analysis. In: 2017 51st Asilomar Conference on Signals, Systems, and Computers, 2017, Pacific Grove. 2017 51st Asilomar Conference on Signals, Systems, and Computers, 2017. p. 161.
ARSLAN, EMRE ; Braga-Neto, Ulisses M. . Bayesian top scoring pairs for feature selection. In: 2017 51st Asilomar Conference on Signals, Systems, and Computers, 2017, Pacific Grove. 2017 51st Asilomar Conference on Signals, Systems, and Computers, 2017. p. 387.
KARBALAYGHAREH, ALIREZA ; Braga-Neto, Ulisses ; Dougherty, Edward R. . Intrinsically Bayesian Robust Classifier for Single-Cell Gene Expression Time Series in Gene Regulatory Networks. In: the 8th ACM International Conference, 2017, Boston. Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17. New York: ACM Press, 2017. p. 766.
IMANI, MAHDI ; Braga-Neto, Ulisses . Multiple Model Adaptive controller for Partially-Observed Boolean Dynamical Systems. In: 2017 American Control Conference (ACC), 2017, Seattle. 2017 American Control Conference (ACC), 2017. p. 1103.
MCCLENNY, LEVI D. ; IMANI, MAHDI ; Braga-Neto, Ulisses M. . Boolean Kalman Filter with correlated observation noise. In: 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2017, New Orleans. 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2017. p. 866.
ARSLAN, EMRE ; Braga-Neto, Ulisses M. . A Bayesian approach to Top-Scoring Pairs classification. In: 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2017, New Orleans. 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2017. p. 871.
KARBALAYGHAREH, ALIREZA ; Braga-Neto, Ulisses ; Dougherty, Edward R. . Classification of Gaussian trajectories with missing data in Boolean gene regulatory networks. In: 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2017, New Orleans. 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2017. p. 1078.
IMANI, MAHDI ; Braga-Neto, Ulisses . Point-based value iteration for partially-observed Boolean dynamical systems with finite observation space. In: 2016 IEEE 55th Conference on Decision and Control (CDC), 2016, Las Vegas. 2016 IEEE 55th Conference on Decision and Control (CDC), 2016. p. 4208.
IMANI, MAHDI ; Braga-Neto, Ulisses . State-feedback control of Partially-Observed Boolean Dynamical Systems using RNA-seq time series data. In: 2016 American Control Conference (ACC), 2016, Boston. 2016 American Control Conference (ACC), 2016. p. 227.
IMANI, MAHDI ; Braga-Neto, Ulisses . Optimal state estimation for boolean dynamical systems using a boolean Kalman smoother. In: 2015 IEEE Global Conference on Signal and Information Processing (GlobalSIP), 2015, Orlando. 2015 IEEE Global Conference on Signal and Information Processing (GlobalSIP), 2015. p. 972.
IMANI, MAHDI ; Braga-Neto, Ulisses . Optimal gene regulatory network inference using the Boolean Kalman filter and multiple model adaptive estimation. In: 2015 49th Asilomar Conference on Signals, Systems and Computers, 2015, Pacific Grove. 2015 49th Asilomar Conference on Signals, Systems and Computers, 2015. p. 423.
BAHADORINEJAD, ARGHAVAN ; Braga-Neto, Ulisses . Optimal fault detection in stochastic Boolean regulatory networks. In: 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP), 2014, Atlanta. 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP), 2014. p. 1386.
JIANG, XINGDE ; Braga-Neto, Ulisses . A Naive-Bayes approach to Bolstered error estimation in high-dimensional spaces. In: 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP), 2014, Atlanta. 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP), 2014. p. 1398.
Braga-Neto, Ulisses . Particle filtering approach to state estimation in Boolean dynamical systems. In: 2013 IEEE Global Conference on Signal and Information Processing (GlobalSIP), 2013, Austin. 2013 IEEE Global Conference on Signal and Information Processing, 2013. p. 81.
CHEN, TING ; Braga-Neto, Ulisses . Optimal Bayesian MMSE estimation of the coefficient of determination for discrete prediction. In: 2013 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2013, Houston. 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013. p. 66.
Zollanvari, Amin ; Braga-Neto, Ulisses M. ; Dougherty, Edward R. . Effect of mixing probabilities on the bias of cross-validation under separate sampling. In: 2013 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2013, Houston. 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013. p. 98.
ATASHPAZ-GARGARI, ESMAEIL ; Braga-Neto, Ulisses M. ; Dougherty, Edward R. . Improved branch-and-bound algorithm for U-curve optimization. In: 2013 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2013, Houston. 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013. p. 100.
CHEN, TING ; Braga-Neto, Ulisses . A statistical test for intrinsically multivariate predictive genes. In: 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2012, Washington. Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2012. p. 151.
Braga-Neto, Ulisses . Joint state and parameter estimation for Boolean dynamical systems. In: 2012 IEEE Statistical Signal Processing Workshop (SSP), 2012, Ann Arbor. 2012 IEEE Statistical Signal Processing Workshop (SSP), 2012. p. 704.
SUN, YOUTING ; Braga-Neto, Ulisses ; Dougherty, Edward R. . Modeling and systematic analysis of LC-MS proteomics pipeline. In: 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011, San Antonio. 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011. p. 112.
CHEN, TING ; Braga-Neto, Ulisses . Sample-based estimators for the instrinsically multivariate prediction score. In: 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011, San Antonio. 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011. p. 139.
ATASHPAZ-GARGARI, ESMAEIL ; SIMA, Chao ; Braga-Neto, Ulisses M. ; Dougherty, Edward R. . Relationship between the accuracy of classifier error estimation and distribution complexity. In: 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011, San Antonio. 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011. p. 147.
AFRA, SARDAR ; Braga-Neto, Ulisses . Studying the possibility of peaking phenomenon in linear support vector machines with non-separable data. In: 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011, San Antonio. 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011. p. 218.
ATASHPAZ-GARGARI, ESMAEIL ; Braga-Neto, Ulisses M. ; Dougherty, Edward R. . Multiple reaction monitoring: Modeling and systematic analysis. In: 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011, San Antonio. 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2011. p. 105.
ZHENGHAO ZHANG ; YOUTING SUN ; BRAGA-NETO, U. ; DOUGHERTY, E. ; JIANQIU ZHANG . A parallel programming framework with Markovian messaging for LC-MS peptide detection. In: 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), 2011, Atlanta. 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), 2011. p. 1057.
Braga-Neto, Ulisses . Optimal state estimation for Boolean dynamical systems. In: 2011 45th Asilomar Conference on Signals, Systems and Computers, 2011, Pacific Grove. 2011 Conference Record of the Forty Fifth Asilomar Conference on Signals, Systems and Computers (ASILOMAR), 2011. p. 1050.
CHEN, TING ; Braga-Neto, Ulisses . Maximum likelihood estimation of the binary Coefficient of Determination. In: 2011 45th Asilomar Conference on Signals, Systems and Computers, 2011, Pacific Grove. 2011 Conference Record of the Forty Fifth Asilomar Conference on Signals, Systems and Computers (ASILOMAR), 2011. p. 1012.
TING CHEN ; BRAGA-NETO, U . Approximate expressions for the variances of non-randomized error estimators and CoD estimators for the discrete histogram rule. In: 2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2010, Cold Spring Harbor. 2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2010. p. 1.
ZOLLANVARI, A ; BRAGA-NETO, U M ; DOUGHERTY, e R . RMS bounds and sample size considerations for error estimation in linear discriminant analysis. In: 2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2010, Cold Spring Harbor. 2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), 2010. p. 1.
BRAGA-NETO, Ulisses de Mendonça . Grayscale Level Multiconnectivity. In: International Symposium on Mathematical Morphology: 40 Years On - ISMM'05, 2005, Paris, França. Proceedings of the ISMM'05. Dordrecht, Netherlands: Springer, 2005. p. 129-138.
BRAGA-NETO, Ulisses de Mendonça . Small-Sample Error Estimation: Mythology Versus Mathematics. In: SPIE Optics & Photonics 2005, 2005, San Diego USA. Proceedings of SPIE Vol. 5916: Mathematical Methods in Pattern and Image Analysis, 2005.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, J . On a General Theory of Connectivity in Image Analysis. In: IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing - NSIP'01, 2001, Baltimore, MD - USA, 2001.
HAN, X ; XU, C ; BRAGA-NETO, Ulisses de Mendonça ; PRINCE, J L . Graph-Based Topology Correction for Brain Cortex Segmentation. In: XVIIth International Conference on Information Processing in Medical Imaging - IPMI'01, 2001, Davis, CA - USA, 2001. p. 395-401.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, J . Multiresolution Connectivity: An Axiomatic Approach. In: 5th International Symposium on Mathematical Morphology and Its Applications to Image and Signal Processing - ISMM'2000, 2000, Palo Alto, CA - USA. Mathematical Morphology and Its Applications to Image and Signal Processing (Computational imaging and vision, Vol 18). Boston, MA - USA: Kluwer Academic Publishers, 2000. p. 159-168.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, J . Automatic Target Detection and Tracking in Forward-Looking Infrared Image Sequences using Morphological Connected Operators. In: 33rd Annual Conference on Information Sciences and Systems - CISS'99., 1999, Baltimore, MD - USA, 1999. v. I. p. 173-178.
BRAGA-NETO, Ulisses de Mendonça ; GOUTSIAS, J . On Detecting Mines and Minelike Objects in Highly Cluttered Multispectral Aerial Images by Means of Mathematical Morphology. In: Detection and Remediation Technologies for Mines and Minelike Targets III, 1998, Orlando, FL. Proceedings of SPIE, 1998. v. 3392. p. 987-999.
BRAGA-NETO, Ulisses de Mendonça ; SIQUEIRA NETO, W A ; DIAS E SILVA, A F . Mammmographic Calcification Detection By Mathematical Morphology Methods. In: 3rd International Workshop on Digital Mammography, 1996, Chicago, Illinois - EUA. Digital Mammography '96, 1996. p. 263-266.
BRAGA-NETO, Ulisses de Mendonça . Alternating Sequential Filters By Adaptive-Neighborhood Structuring Functions. In: III INTERNATIONAL SYMPOSIUM ON MATHEMATICAL MORPHOLOGY (ISMM'96), 1996, Atlanta, GA - USA. Mathematical Morphology and Its Applications to Image and Signal Processing (Computational Imaging and Vision, Vol 5). Boston, EUA: Kluwer Academic Publishing, 1996. p. 139-146.
BRAGA-NETO, Ulisses de Mendonça . Adaptive-Neighborhood Alternating Sequential Filters. In: BRAZILIAN WORKSHOP'96 ON MATHEMATICAL MORPHOLOGY, 1996, Sao Paulo, SP, 1996. p. 0-0.
BRAGA-NETO, Ulisses de Mendonça . Mammographic Calcification Detection By Mathematical Morphology Methods. In: BRAZILIAN WORKSHOP'96 ON MATHEMATICAL MORPHOLOGY, 1996, Sao Paulo, SP, 1996. p. 0-0.
BRAGA-NETO, Ulisses de Mendonça ; LOTUFO, R A . Image Analysis Of Porous Media By 3-D Mathematical Morphology. In: VIII SIMPOSIO BRASILEIRO DE COMPUTACAO GRAFICA E PROCESSAMENTO DE IMAGENS (SIBGRAPI'95), 1995, SAO CARLOS, SP, 1995. p. 0-0.
BRAGA-NETO, Ulisses de Mendonça . Detection And Classification Of Mammographic Calcifications By The Watershed Method. In: VIII SIMPOSIO BRASILEIRO DE COMPUTACAO GRAFICA E PROCESSAMENTO DE IMAGENS (SIBGRAPI'95), 1995. SAO CARLOS, SP. p. 0-0.
BRAGA-NETO, Ulisses de Mendonça . Adaptive Alternating Sequential Filters. In: VIII SIMPOSIO BRASILEIRO DE COMPUTACAO GRAFICA E PROCESSAMENTO DE IMAGENS (SIBGRAPI'95), 1995, SAO CARLOS, SP, 1995. p. 0-0.
BRAGA-NETO, Ulisses de Mendonça ; LOTUFO, R A . Mathematical Morphology Tools For 3-D Image Analysis Of Porous Media. In: Neural, Morphological and Stochastic Methods in Image and Signal Processing, 1995, San Diego, CA - EUA. Proceedings of SPIE, 1995. v. 2568. p. 139-150.
BRAGA-NETO, Ulisses de Mendonça . Ferramentas da Morfologia Matematica Para A Analise de Imagens Tridimensionais. In: WORKSHOP'95 DE MORFOLOGIA MATEMATICA, 1995, Campinas, SP, 1995. p. 0-0.
BRAGA-NETO, Ulisses de Mendonça ; LOTUFO, R A . Uma Tecnica Computacionalmente Eficiente Para O Resistro de Secoes Seriadas. In: VII SIMPOSIO BRASILEIRO DE COMPUTACAO GRAFICA E PROCESSAMENTO DE IMAGENS (SIBGRAPI'94), 1994, CURITIBA, PR, 1994. p. 39-46.
LUPPI, R M S ; KLIGERMAN, D M ; FALCAO, A X ; BRAGA-NETO, Ulisses de Mendonça ; VIEIRA, A J B ; LOTUFO, R A . V3dtools: A Khoros Toolbox For 3-D Imaging. In: WORLD CONGRESS ON MEDICAL PHYSICS AND BIOMEDICAL ENGINEERING, 1994, RIO DE JANEIRO, RJ. p. 639-639.
BRAGA-NETO, Ulisses de Mendonça ; VIEIRA, A J B ; LOTUFO, R A . 3d Interpolation In The Frequency Domain. In: WORLD CONGRESS ON MEDICAL PHYSICS AND BIOMEDICAL ENGINEERING, 1994, RIO DE JANEIRO, RJ, 1994. p. 619-619.
Zollanvari, Amin ; BRAGA-NETO, Ulisses de Mendonça ; DOUGHERTY, Edward . Joint Sampling Distribution Between Actual and Estimated Classification Errors for Linear Discriminant Analysis. IEEE Transactions on Information Theory , 2010.
DOUGHERTY, e R ; SIMA, Chao ; HUA, JIANPING ; HANCZAR, B. ; Braga-Neto, U. M. . Performance of Error Estimators for Classification. Current Bioinformatics (Print) , 2009.
Braga-Neto, Ulisses M. ; Dougherty, Edward R. . Exact correlation between actual and estimated errors in discrete classification. Pattern Recognition Letters , 2009.
SUN, Y. ; BRAGA-NETO, Ulisses de Mendonça ; DOUGHERTY, Edward . Impact of Missing Value Imputation on Classification for DNA Microarray Gene Expression Data - A Model-Based Study. EURASIP Journal on Bioinformatics and Systems Biology (Print) , 2009.
Nascimento, Eduardo J. M. ; Braga-Neto, Ulisses ; Calzavara-Silva, Carlos E. ; Gomes, Ana L. V. ; Abath, Frederico G. C. ; Brito, Carlos A. A. ; Cordeiro, Marli T. ; Silva, Ana M. ; Magalhães, Cecilia ; Andrade, Raoni ; Gil, Laura H. V. G. ; Marques, Ernesto T. A. . Gene Expression Profiling during Early Acute Febrile Stage of Dengue Infection Can Predict the Disease Outcome. Plos One , 2009.

Projetos de pesquisa

2009 - 2013

CAREER: Theory and Application of Small-Sample Error Estimation in Genomic Signal Processing, Descrição: This project has as its goal solving significant computational and statistical problems that exist in small-sample error estimation. This project is opportune and timely due to need to develop novel robust small-sample error estimation methodologies in Genomic Signal Processing to enable reproducible scientific discovery that leads to genuine medical advancement. Among the significant open problems that the P.I. plans to address are (1) to obtain exact and approximate representations of the joint sampling distribution of the estimated and true errors for linear continuous classifiers, which will lead to better-performing error estimators and practical tools to assess significance of results; (2) to study error estimation for discrete classifiers, including the binary coefficient of determination (CoD), using both analytical and complete enumeration approaches; (3) to develop the methodology of bolstered error estimation, which the P.I. introduced, addressing the application in high-dimensional spaces and with adaptive kernels, with an emphasis on feature selection; (4) to apply these error estimation techniques to the problem of biomarker discovery for disease diagnosis and prognosis, in collaboration with the P.I.?s close medical collaborators at Translational Genomics (TGen), the Johns Hopkins Medical School, and the Oswaldo Cruz Foundation, Brazil (FIOCRUZ).. , Situação: Em andamento; Natureza: Pesquisa. , Alunos envolvidos: Doutorado: (1) . , Integrantes: Ulisses de Mendonça Braga Neto - Coordenador., Financiador(es): National Science Foundation - Auxílio financeiro.
2008 - 2010

Reproducible Discovery of Molecular Biomarkers Using Proteomic Data, Descrição: O objetivo deste projeto é o estudo do desenho experimental e propriedades relativos ao Reconhecimento de Padrões aplicado a dados de espectrometria de massa gerados pela Parceria de Medicina Personalizada (PPM, em Inglês), com a finalidade da descoberta de biomarcadores para o diagnóstico de prognóstico de vários tipos de câncer.. , Situação: Em andamento; Natureza: Pesquisa. , Alunos envolvidos: Doutorado: (2) . , Integrantes: Ulisses de Mendonça Braga Neto - Coordenador., Financiador(es): Translational Genomics - Auxílio financeiro.
2004 - Atual

Desenvolvimento de Uma Vacina Genética contra a Dengue, Descrição: Coleta de amostras de sangue de pacientes infectados com Dengue para isolamento de células, clonagem, processamento, e identificação de epitopos candidatos para alvo de vacinas genéticas, utilizando para tal técnicas de Bioinformática.. , Situação: Em andamento; Natureza: Pesquisa. , Alunos envolvidos: Graduação: (2) / Especialização: (1) / Mestrado acadêmico: (1) / Mestrado profissional: (0) / Doutorado: (1) . , Integrantes: Ulisses de Mendonça Braga Neto - Integrante / Ernesto Marques - Coordenador / Rômulo Maciel - Integrante / Thomas August - Integrante / Vladimir Brusic - Integrante / Eduardo Nascimento - Integrante / Rafael Dhalia - Integrante / Laura Gil - Integrante / Giovani Bertani - Integrante., Financiador(es): National Institute Of Health - Remuneração / Conselho Nacional de Desenvolvimento Científico e Tecnológico - Bolsa.
2002 - 2004

Study of chemopreventive agents for Li Fraumeni and Retinoblastoma cancers, Descrição: Estudo "in-vivo" e "in-vitro" da farmacologia e toxicologia de agentes quimioterápicos por meio da genômica funcional ("gene-expression microarrays"), usando células humanas mutantes de cânceres dominantemente hereditários: síndrome de Li Fraumeni e retinoblastoma bilateral.. , Situação: Em andamento; Natureza: Pesquisa. , Alunos envolvidos: Graduação: (0) / Especialização: (0) / Mestrado acadêmico: (0) / Mestrado profissional: (0) / Doutorado: (0) . , Integrantes: Ulisses de Mendonça Braga Neto - Coordenador / Edward Dougherty - Integrante / Louise Strong - Integrante / Kevin Coombes - Integrante / Mini Kapoor - Integrante / Funda Meric - Integrante / Rueben Lotan - Integrante / Adel El Naggar - Integrante / Zhen Lin Ju - Integrante / J Peter Koo - Integrante., Financiador(es): National Institute Of Health - Remuneração.

Prêmios

2017

Elected to the Texas A&M University?s Council of Principal Investigators (CPI), Texas A&M University.

2017

Elected to the Texas A&M Faculty Senate, Texas A&M University.

2017

Elected to the IEEE SPS Biomedical Imaging and Signal Processing Technical Committee, IEEE.

2017

Elected to the IEEE SPS Machine Learning for Signal Processing Technical Committee, IEEE.

2014

Elected to the Texas A&M University?s Council of Principal Investigators (CPI), Texas A&M University.

2013

Outstanding Professor Award, ECE Department, Texas A&M University.

2011

Elevated to IEEE Senior Member, IEEE.

2009

NSF CAREER Award, National Science Foundation.

2008

International Travel Research Grant (IRTAG), Office of International Outreach, Texas A&M University.

2006

"Fast-Breaking Paper" in the field of Computer Science for February 2006, ISI Web of Knowledge.

1996

Abel Wolman Fellowship, The Johns Hopkins University.

1992

Láurea Universitária, Universidade Federal de Pernambuco.

1987

Primeiro Lugar Geral no Vestibular UFPE/UFRPE, COVEST.

Histórico profissional

Endereço profissional

Texas Agricultural & Mechanics University, Dwight Look College of Engineering, Department of Electrical and Computer Engineering. , 3128 TAMU, 77843-3128 - College Station, - Estados Unidos, Telefone: (979) 8626441, Fax: (979) 8456259, URL da Homepage:

Experiência profissional

2013 - Atual

Texas Agricultural & Mechanics University, Texas A & M

Vínculo: Celetista, Enquadramento Funcional: Associate Professor, Carga horária: 40, Regime: Dedicação exclusiva.

2007 - 2013

Texas Agricultural & Mechanics University, Texas A & M

Vínculo: Celetista formal, Enquadramento Funcional: Assistant Professor, Carga horária: 40

2004 - 2006

Centro de Pesquisas Aggeu Magalhães

Vínculo: Colaborador, Enquadramento Funcional: Colaborador, Carga horária: 40, Regime: Dedicação exclusiva.

2004 - 2006

Centro de Pesquisas Aggeu Magalhães

Vínculo: Servidor Público, Enquadramento Funcional: Pesquisador Assistente, Carga horária: 40, Regime: Dedicação exclusiva.

Atividades

10/2004
Pesquisa e desenvolvimento , Centro de Pesquisas Aggeu Magalhães, .,Linhas de pesquisa

2002 - 2004

Texas A&M University System

Vínculo: Professor Visitante, Enquadramento Funcional: Pós-Doutorando, Carga horária: 40

Atividades

11/2002 - 09/2004
Pesquisa e desenvolvimento , Texas A&M University, Electrical Engineering Department.,Linhas de pesquisa

2002 - 2004

University of Texas System, UT System

Vínculo: Pós-Doutorando, Enquadramento Funcional: Post-Doctoral Fellow, Carga horária: 2

2001 - 2002

Johns Hopkins University

Vínculo: Pós-Doutorando, Enquadramento Funcional: Reasearch Associate, Carga horária: 0, Regime: Dedicação exclusiva.

1996 - 2001

Johns Hopkins University

Vínculo: Aluno Doutorado, Enquadramento Funcional: Teaching Assistant (T.A.), Carga horária: 10

Atividades

10/2001 - 10/2002
Pesquisa e desenvolvimento , Whiting School Of Engineering, Electrical Engineering Department.,Linhas de pesquisa
08/1997 - 05/2001
Ensino, Electrical Engineering, Nível: Graduação,Disciplinas ministradas, Image Processing and Analysis I, Image Processing and Analysis II

1995 - 1996

Universidade Federal de Pernambuco

Vínculo: Bolsista DCR, Enquadramento Funcional: Instrutor, Carga horária: 20

Atividades

08/1995 - 06/1996
Ensino, Engenharia Elétrica, Nível: Graduação,Disciplinas ministradas, Processamento Digital de Imagens

1993 - 1994

Universidade Estadual de Campinas

Vínculo: Aluno Mestrado, Enquadramento Funcional: Assistente de Ensino (monitor), Carga horária: 10

Atividades

08/1993 - 12/1993
Ensino, Engenharia Elétrica, Nível: Graduação,Disciplinas ministradas, Processamento Digital de Imagens

1992 - 1992

Sat Phillips

Vínculo: Estagiário, Enquadramento Funcional: Estagiário, Carga horária: 20

Atividades

08/1992 - 12/1992
Estágios , Sat Phillips, .,Estágio realizado, Desenvolvimento de Centrais Telefônicas Digitais.

1992 - 1992

Twr Informática

Vínculo: Estagiário, Enquadramento Funcional: Estagiário, Carga horária: 20

Atividades

02/1992 - 06/1992
Estágios , Twr Informática, .,Estágio realizado, Desenvolvimento de Microterminais Digitais.