-
FILETO, Renato ; Kuser, P. R. ; Yamagishi, M. E. B. ; Ribeiro AA ; Quinalia TG ; Franco, E. ; MANCINI, A. L. ; Higa, R. H. ; Oliveira SR ; SANTOS, E. ; VIEIRA, F. D. ; MAZONI, I. ; CRUZ, S.A. ; Neshich, G. . PDB-Metrics: a web tool for exploring the PDB contents. Genetics and Molecular Research , v. 5, p. 333-341, 2006.
-
Borro, L. C. ; Yamagishi, M. E. B. ; MANCINI, A. L. ; JARDINE, José G. ; MAZONI, I. ; SANTOS, Edgard H. dos ; Higa, R. H. ; Kuser, P. R. ; Neshich, G. . Predicting enzyme class from protein structure using Bayesian classification. Genetics and Molecular Research , v. 5, p. 193-202, 2006.
-
Neshich, G. ; MAZONI, I. ; Oliveira SR ; Yamagishi, M. E. B. ; Kuser, P. R. ; Borro, L. C. ; Morita, D. U. ; Souza, K. R. R. ; Almeida, G. V. ; Rodrigues, D. N. ; JARDINE, José G. ; Togawa, R. C. ; MANCINI, A. L. ; Higa, R. H. ; CRUZ, Sérgio A. B. . The Star STING server: a multiplatform environment for protein structure analysis. Genetics and Molecular Research , v. 5, p. 717-722, 2006.
-
Higa, R. H. ; CRUZ, S.A. ; Kuser, P. R. ; Yamagishi, M. E. B. ; FILETO, Renato ; Oliveira SR ; MAZONI, I. ; SANTOS, Edgard H. dos ; MANCINI, A. L. ; Neshich, G. . Building multiple sequence alignments with a flavor of HSSP alignments. Genetics and Molecular Research , v. 5, p. 127-137, 2006.
-
Higa, R. H. ; Togawa, R. C. ; MONTAGNER, A J ; PALANDRINI, J. C. ; OKIMOTO, I. K. ; Kuser, P. R. ; Yamagishi, M. E. B. ; MANCINI, A. L. ; Neshich, G. . STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes. BMC Bioinformatics , v. 5, p. 107-116, 2005.
-
Neshich, G. ; MANCINI, A. L. ; Yamagishi, M. E. B. ; Kuser, P. R. ; FILETO, Renato ; PINTO, I. P. ; PALANDRINI, J. C. ; KRAUCHENCO, J. ; Baudet, C. ; MONTAGNER, A J ; Higa, R. H. . STING Report: convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database. Nucleic Acids Research , v. 33, p. D269-D274, 2005.
-
Neshich, G. ; Borro, L. C. ; Higa, R. H. ; FALCAO, P. R. K. ; Yamagishi, M. E. B. ; FRANCO, E. H. ; KRAUCHENCO, J. N. ; FILETO, R. ; RIBEIRO, A. A. ; BEZERRA, G. B. P. ; VELLUDO, T. M. ; JIMENEZ, T. S. ; FURUKAWA, N. ; TESHIMA, H. ; KITAJIMA, K. ; BAVA, A. ; SARAI, A. ; Togawa, R. C. ; MANCINI, A. L. . The Diamond STING server. Nucleic Acids Research , v. 33, p. W29-W35, 2005.
-
Higa, R. H. ; MONTAGNER, A J ; Togawa, R. C. ; Kuser, P. R. ; Yamagishi, M. E. B. ; MANCINI, A. L. ; PAPPAS, G. J. ; MIURA, R. T. ; HORITA, L. G. ; Neshich, G. . ConSSeq: a web-based application for analysis of amino acid conservation based on HSSP database and within context of structure. Bioinformatics (Oxford) , v. 20, p. 1983-1985, 2004.
-
MANCINI, A. L. ; Higa, R. H. ; Oliveira SR ; Dominiquini, F. ; Kuser, P. R. ; Yamagishi, M. E. B. ; Togawa, R. C. ; Neshich, G. . Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces. Bioinformatics (Oxford) , v. 20, p. 2145-2147, 2004.
-
Neshich, G. ; Rocchia, W. ; MANCINI, A. L. ; Yamagishi, M. E. B. ; Kuser, P. R. ; FILETO, Renato ; MONTAGNER, A J ; Baudet, C. ; Togawa, R. C. ; Higa, R. H. . Protein Dossier: A novel Web based data visualization tool for comprehensive analysis of protein structure. Nucleic Acids Research , v. 32, p. 595-601, 2004.
-
Higa, R. H. ; Oliveira SR ; HORITA, L. G. ; MIURA, R. T. ; INOUE, M. K ; Kuser, P. R. ; MANCINI, A. L. ; Yamagishi, M. E. B. ; Togawa, R. C. ; Neshich, G. . Defining 3D residue environment in protein structures using SCORPION and FORMIGA. Bioinformatics (Oxford) , v. 20, p. 1989-1991, 2004.
-
Neshich, G. ; Togawa, R. C. ; MANCINI, A. L. ; Kuser, P. R. ; Yamagishi, M. E. B. ; Gomes, G. B. ; Freitas, E. M. ; Souza, S. ; Baudet, C. ; Higa, R. H. . STING Millennium: a web-based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence. Nucleic Acids Research, v. 31, n.13, p. 3386-3392, 2003.
-
MANCINI, A. L. . Um algoritmo para geração de caminhos em grafos a partir de um vértice. Comunicado Técnico Embrapa Informática Agropecuária , v. 15, 2001.
-
MANCINI, A. L. ; Romero, R. A. F. . Reconhecimento de padrões de pontes de hidrogênio em proteínas para previsão da posição dos átomos de hidrogênio. In: WTDIA, 2006, Ribeirão Preto/S.P.. WTDIA 2006, 2006.
-
Higa, R. H. ; CRUZ, S.A. ; Kuser, P. R. ; Yamagishi, M. E. B. ; FILETO, Renato ; MANCINI, A. L. ; Neshich, G. . Building Multiple Sequence Alignments with a flavour of HSSP alignments. In: X-Meeting. First Inernational Conference of th AB3C, 2005, Caxambu/M.G.. Proceedings of the First International Conference of th AB3C, 2005.
-
Yamagishi, M. E. B. ; BEZERRA, George B. P. ; Quinalia TG ; Kuser, P. R. ; Higa, R. H. ; MANCINI, A. L. ; JARDINE, José G. ; MAZONI, I. ; SANTOS, E. ; CRUZ, S.A. ; Oliveira SR ; Neshich, G. ; Ray, N. ; Maigret, B. . An Interactive Protein Interface Surface Java Viewer. In: X-Meeting. First International Conference of th AB3C, 2005, Caxambu/M.G.. Proceedings of the First International Conference of th AB3C, 2005.
-
CRUZ, S.A. ; MAZONI, I. ; Oliveira SR ; Yamagishi, M. E. B. ; Kuser, P. R. ; SANTOS, Edgard H. dos ; Vieira, F.D. ; Higa, R. H. ; MANCINI, A. L. ; Neshich, G. . JMOL and STING integration: a STING for multiple plataforms. In: First X-Meeting. First International Conference of the AB3C, 2005, Caxambu/M.G.. Proceedings of the First International Conference of th AB3C, 2005. p. 86.
-
Oliveira SR ; Pavanelli, D. S. ; Almeida, G. V. ; Yamagishi, M. E. B. ; Kuser, P. R. ; SANTOS, Edgard H. dos ; VIEIRA, F. D. ; MAZONI, I. ; CRUZ, S.A. ; Higa, R. H. ; MANCINI, A. L. ; Neshich, G. . STING_DB: A relational database of structural parameters for protein analysis. In: First X-Meeting. First International Conference of th AB3C, 2005, Caxambu/M.G.. Proceedings of the First International Conference of th AB3C, 2005. p. 132.
-
Neshich, G. ; Kuser, P. R. ; Yamagishi, M. E. B. ; Oliveira SR ; MAZONI, I. ; SANTOS, E. ; VIEIRA, F. D. ; CRUZ, S.A. ; MANCINI, A. L. ; JARDINE, José G. ; Higa, R. H. . What makes the active site amino acids so different from the others: defining the structural descriptors specific for activity. In: FirstX-Meeting. First International Conference of th AB3C, 2005, Caxambu/M.G.. Proceedings of the First International Conference of th AB3C, 2005. p. 149.
-
Neshich, G. ; MANCINI, A. L. ; Yamagishi, M. E. B. ; Kuser, P. R. ; Higa, R. H. . Gold STING: the new DB and concept in protein structure/function data visualisation/analysis. In: XXXIII Reunião Anual da Sociedade Brasileira de Bioquímica e Biologia Molecular, 2004, Caxambu/M.G.. XXXIII Reunião Anual da Sociedade Brasileira de Bioquímica e Biologia Molecular, 2004.
-
Neshich, G. ; MANCINI, A. L. ; Kuser, P. R. ; FILETO, Renato ; Yamagishi, M. E. B. ; Higa, R. H. . Gold STING: studying protein stability and folding by looking at an extensive DB of the structure descriptors. In: XIIth International Conference on Intelligent Systems for Molecular Biology, 2004, Glasgow/Escócia. XIIth International Conference on Intelligent Systems for Molecular Biology, 2004.
-
Neshich, G. ; MANCINI, A. L. ; Kuser, P. R. ; FILETO, Renato ; Yamagishi, M. E. B. ; Higa, R. H. . Selecting a set of the protein structure descriptors uniquely defining the active site residues. In: XII International Conference on Intelligent Systems for Molecular Biology, 2004. Proceedings of the XII International Conference on Intelligent Systems for Molecular Biology.
-
Neshich, G. ; Kuser, P. R. ; JESUS, K. R. E ; MANCINI, A. L. ; Yamagishi, M. E. B. ; FILETO, Renato ; Higa, R. H. . Selecting a set of the protein structure descriptors uniquely defining the active site residues. In: 1st Latin American Protein Society Meeting, 2004, Angra dos Reis/R.J.. Proceedings of the 1st Latin American Protein Society Meeting, 2004.
-
MANCINI, A. L. ; Higa, R. H. ; Kuser, P. R. ; Yamagishi, M. E. B. ; Neshich, G. . STING MILLENNIUN SUITE (SMS) AS A TOOL FOR IDENTIFICATION AND VISUALIZATION OF PROTEIN INTRA AND INTER CHAIN CONTACTS. In: XXII Reunião anual SBBq, 2003, Caxambu. XXII Reunião anual SBBq, programas e resumos, 2003. v. 15. p. 261-261.
-
Kuser, P. R. ; Higa, R. H. ; Baudet, C. ; MANCINI, A. L. ; Yamagishi, M. E. B. ; Neshich, G. . Sting Millenium Suite of software tools for analysis of protein structures and summary of structure/function parameters. In: XXII Reunião anual SBBq, 2003, Caxambu. XXII Reunião anual SBBq, programas e resumos, 2003. p. 259-259.
-
Higa, R. H. ; Kuser, P. R. ; MANCINI, A. L. ; Yamagishi, M. E. B. ; Neshich, G. . Protein Dossier a java tool for analyzing stability and potencial function of proteins with known structure. In: XXII Reunião anual SBBq, 2003, Caxambu. XXII Reunião anual SBBq, programas e resumos, 2003. p. 259-259.
-
Yamagishi, M. E. B. ; Kuser, P. R. ; Higa, R. H. ; MANCINI, A. L. ; Neshich, G. . IN SILICO FILTERING OF SUCCESSFUL PROTEIN-LIGAND BINDING. In: XXII Reunião anual SBBq, 2003, Caxambu. XXII Reunião anual SBBq, programas e resumos, 2003. p. 260-260.
-
Neshich, G. ; Togawa, R. C. ; Rocchia, W. ; Kuser, P. R. ; MANCINI, A. L. ; Yamagishi, M. E. B. ; Baudet, C. ; Higa, R. H. . STING MILLENNIUM SUITE v. 3 and JAVA PROTEIN DOSSIER: a novel concept in data visualization and analysis of the protein structure/function relationship. In: IIth International Conference on Intelligent Systems for Molecular Biology, 2003, Brisbane/Austrália. IIth International Conference on Intelligent Systems for Molecular Biology, 2003.