João Miguel Magalhães Neto

Pós-doutorado

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Organização de eventos

Participação em bancas

Orientou

Produções bibliográficas

• NETO, J.M. ; FEIO, M.J. ; TEIXEIRA, H. ; Patrício, J. ; SERRA, S.R.Q. ; FRANCO, J.N. ; CALAPEZ, A.R. ; CONSTANTINO, E. . Transitional and freshwater bioassessments: One site, two perspectives?. Marine Pollution Bulletin. , v. 78, p. 153-164, 2014.

• NETO, JOÃO M. ; BARROSO, DIMITRI V. ; BARRÍA, PABLO . Seagrass Quality Index (SQI), a Water Framework Directive compliant tool for the assessment of transitional and coastal intertidal areas. Ecological Indicators , v. 30, p. 130-137, 2013.

• CAÇADOR, I. ; NETO, J.M. ; DUARTE, B. ; BARROSO, D.V. ; PINTO, M. ; MARQUES, J.C. . Development of an Angiosperm Quality Assessment Index (AQuA-Index) for ecological quality evaluation of Portuguese water bodies-A multi-metric approach. Ecological Indicators , v. 25, p. 141-148, 2013.

• MARQUES, LUÍSA ; CARRIÇO, ANA ; BESSA, FILIPA ; GASPAR, RUI ; NETO, JOÃO M. ; PATRÍCIO, JOANA . Response of intertidal macrobenthic communities and primary producers to mitigation measures in a temperate estuary. Ecological Indicators , v. 25, p. 10-22, 2013.

• PINNA, MAURIZIO ; MARINI, GABRIELE ; ROSATI, ILARIA ; NETO, JOÃO M. ; PATRÍCIO, JOANA ; MARQUES, JOÃO CARLOS ; BASSET, ALBERTO . The usefulness of large body-size macroinvertebrates in the rapid ecological assessment of Mediterranean lagoons. Ecological Indicators , v. 29, p. 48-61, 2013.

• MARBÀ, NÚRIA ; KRAUSE-JENSEN, DORTE ; ALCOVERRO, TERESA ; BIRK, SEBASTIAN ; PEDERSEN, ARE ; NETO, JOAO M. ; ORFANIDIS, SOTIRIS ; GARMENDIA, JOXE M. ; MUXIKA, IÑIGO ; BORJA, ANGEL ; DENCHEVA, KRISTINA ; DUARTE, CARLOS M. . Diversity of European seagrass indicators: patterns within and across regions. Hydrobiologia (The Hague. Print) , v. 704, p. 265-278, 2013.

• MASCARÓ, ORIOL ; ALCOVERRO, TERESA ; DENCHEVA, KRISTINA ; DÍEZ, ISABEL ; GOROSTIAGA, JOSÉ M. ; KRAUSE-JENSEN, DORTE ; BALSBY, THORSTEN J. S. ; MARBÀ, NÚRIA ; MUXIKA, IÑIGO ; NETO, JOÃO M. ; NIKOLI', VEDRAN ; ORFANIDIS, SOTIRIS ; PEDERSEN, ARE ; PÉREZ, MARTA ; ROMERO, JAVIER . Exploring the robustness of macrophyte-based classification methods to assess the ecological status of coastal and transitional ecosystems under the Water Framework Directive. Hydrobiologia (The Hague. Print) , v. 704, p. 279-291, 2013.

• BASSET, ALBERTO ; BARBONE, ENRICO ; BORJA, ANGEL ; ELLIOTT, MICHAEL ; JONA-LASINIO, GIOVANNA ; MARQUES, JOÃO CARLOS ; MAZIK, KRYSIA ; MUXIKA, IÑIGO ; Neto, João Magalhães ; REIZOPOULOU, SOFIA ; ROSATI, ILARIA ; TEIXEIRA, HELIANA . Natural variability and reference conditions: setting type-specific classification boundaries for lagoon macroinvertebrates in the Mediterranean and Black Seas. Hydrobiologia (The Hague. Print) , v. 704, p. 325-345, 2013.

• MANTAS, V.M. ; PEREIRA, A.J.S.C. ; NETO, J. ; PATRÍCIO, J. ; MARQUES, J.C. . Monitoring estuarine water quality using satellite imagery. The Mondego river estuary (Portugal) as a case study. Ocean & Coastal Management , v. 72, p. 13-21, 2013.

• CEIA, FILIPE R. ; PATRÍCIO, JOANA ; FRANCO, JOÃO ; PINTO, RUTE ; FERNÁNDEZ-BOO, SERGIO ; LOSI, VALENTINA ; MARQUES, JOÃO CARLOS ; NETO, JOÃO M. . Assessment of estuarine macrobenthic assemblages and ecological quality status at a dredging site in a southern Europe estuary. Ocean & Coastal Management , v. 72, p. 80-92, 2013.

• PINTO, R. ; DE JONGE, V.N. ; NETO, J.M. ; DOMINGOS, T. ; MARQUES, J.C. ; PATRÍCIO, J. . Towards a DPSIR driven integration of ecological value, water uses and ecosystem services for estuarine systems. Ocean & Coastal Management , v. 72, p. 64-79, 2013.

• KRISTENSEN, ERIK ; Neto, João Magalhães ; LUNDKVIST, MORTEN ; FREDERIKSEN, LARS ; PARDAL, MIGUEL ÂNGELO ; VALDEMARSEN, THOMAS ; FLINDT, MOGENS RENE . Influence of benthic macroinvertebrates on the erodability of estuarine cohesive sediments: Density- and biomass-specific responses. Estuarine, Coastal and Shelf Science (Print) , v. 134, p. 80-87, 2013.

• MODESTO, V. ; FRANCO, J. N. ; SOUSA, R. ; PATRICIO, J. ; MARQUES, J. C. ; NETO, J. M. . SPATIAL AND TEMPORAL DYNAMICS OF CORBICULA FLUMINEA (MULLER, 1774) IN RELATION TO ENVIRONMENTAL VARIABLES IN THE MONDEGO ESTUARY (PORTUGAL). Journal of Molluscan Studies , v. 79, p. 302-309, 2013.

• BORJA, ANGEL ; ELLIOTT, MIKE ; ANDERSEN, JESPER H. ; CARDOSO, ANA C. ; CARSTENSEN, JACOB ; FERREIRA, JOÃO G. ; HEISKANEN, ANNA-STIINA ; MARQUES, JOÃO C. ; NETO, JOÃO M. ; TEIXEIRA, HELIANA ; UUSITALO, LAURA ; UYARRA, MARÍA C. ; ZAMPOUKAS, NIKOLAOS . Good Environmental Status of marine ecosystems: What is it and how do we know when we have attained it?. Marine Pollution Bulletin. , v. 76, p. 16-27, 2013.

• RAMOS, ELVIRA ; JUANES, JOSÉ A. ; GALVÁN, CRISTINA ; NETO, JOÃO M. ; MELO, RICARDO ; PEDERSEN, ARE ; SCANLAN, CLARE ; WILKES, ROBERT ; VAN DEN BERGH, ERIKA ; BLOMQVIST, MATS ; KARUP, HENNING PETER ; HEIBER, WILFRIED ; REITSMA, JAN M. ; XIMENES, MARIE CLAUDE ; SILIÓ, ANA ; MÉNDEZ, FERNANDO ; GONZÁLEZ, BORJA . Coastal waters classification based on physical attributes along the NE Atlantic region. An approach for rocky macroalgae potential distribution. Estuarine, Coastal and Shelf Science (Print) , v. 112, p. 105-114, 2012.

• FRANCO, J.N. ; CEIA, F.R. ; PATRÍCIO, J. ; MODESTO, V. ; THOMPSON, J. ; MARQUES, J.C. ; NETO, J.M. . Population dynamics of Corbicula fluminea (Müller, 1774) in mesohaline and oligohaline habitats: Invasion success in a Southern Europe estuary. Estuarine, Coastal and Shelf Science (Print) , v. 112, p. 31-39, 2012.

• GONÇALVES, C.I. ; PASQUAUD, S. ; GAMITO, R. ; FONSECA, V.F. ; COSTA, J.L. ; ERZINI, K. ; GONÇALVES, J.M.S. ; MARTINS, J. ; LEITE, L. ; CASTRO, N. ; ANDRADE, J.P. ; RAMOS, S. ; BORDALO, A. ; AMORIM, E. ; NETO, J.M. ; MARQUES, J.C. ; COSTA, M.J. ; CABRAL, H. . Robustness of the Estuarine Fish Assessment Index (EFAI) regarding water body definition criteria. Ecological Indicators , v. 20, p. 1-8, 2012.

• VAN DER LINDEN, PIETER ; PATRÍCIO, JOANA ; MARCHINI, AGNESE ; CID, NÚRIA ; Neto, João Magalhães ; MARQUES, JOÃO CARLOS . A biological trait approach to assess the functional composition of subtidal benthic communities in an estuarine ecosystem. Ecological Indicators , v. 20, p. 121-133, 2012.

• GASPAR, RUI ; PEREIRA, LEONEL ; NETO, JOÃO M. . Ecological reference conditions and quality states of marine macroalgae sensu Water Framework Directive: An example from the intertidal rocky shores of the Portuguese coastal waters. Ecological Indicators , v. 19, p. 24-38, 2012.

• NETO, JOÃO M. ; GASPAR, RUI ; PEREIRA, LEONEL ; MARQUES, JOÃO CARLOS . Marine Macroalgae Assessment Tool (MarMAT) for intertidal rocky shores. Quality assessment under the scope of the European Water Framework Directive. Ecological Indicators , v. 19, p. 39-47, 2012.

• CABRAL, H.N. ; FONSECA, V.F. ; GAMITO, R. ; GONÇALVES, C.I. ; COSTA, J.L. ; ERZINI, K. ; GONÇALVES, J. ; MARTINS, J. ; LEITE, L. ; ANDRADE, J.P. ; RAMOS, S. ; BORDALO, A. ; AMORIM, E. ; NETO, J.M. ; MARQUES, J.C. ; REBELO, J.E. ; SILVA, C. ; CASTRO, N. ; ALMEIDA, P.R. ; DOMINGOS, I. ; GORDO, L.S. ; COSTA, M.J. . Ecological quality assessment of transitional waters based on fish assemblages in Portuguese estuaries: The Estuarine Fish Assessment Index (EFAI). Ecological Indicators , v. 19, p. 144-153, 2012.

• BRITO, ANA C. ; BROTAS, VANDA ; CAETANO, MIGUEL ; COUTINHO, TERESA P. ; BORDALO, ADRIANO A. ; ICELY, JOHN ; NETO, JOÃO M. ; SERÔDIO, JOÃO ; MOITA, TERESA . Defining phytoplankton class boundaries in Portuguese transitional waters: An evaluation of the ecological quality status according to the Water Framework Directive. Ecological Indicators , v. 19, p. 5-14, 2012.

• GAMITO, SOFIA ; PATRÍCIO, JOANA ; NETO, JOÃO M. ; MARQUES, JOÃO CARLOS ; TEIXEIRA, HELIANA . The importance of habitat-type for defining the reference conditions and the ecological quality status based on benthic invertebrates: The Ria Formosa coastal lagoon (Southern Portugal) case study. Ecological Indicators , v. 19, p. 61-72, 2012.

• GAMITO, SOFIA ; PATRÍCIO, JOANA ; NETO, JOÃO M. ; TEIXEIRA, HELIANA ; MARQUES, JOÃO CARLOS . Feeding diversity index as complementary information in the assessment of ecological quality status. Ecological Indicators , v. 19, p. 73-78, 2012.

• VERÍSSIMO, HELENA ; NETO, JOÃO M. ; TEIXEIRA, HELIANA ; FRANCO, J.N. ; FATH, BRIAN D. ; MARQUES, JOÃO CARLOS ; PATRÍCIO, JOANA . Ability of benthic indicators to assess ecological quality in estuaries following management. Ecological Indicators , v. 19, p. 130-143, 2012.

• PATRÍCIO, JOANA ; ADÃO, HELENA ; NETO, JOÃO M. ; ALVES, ANA S. ; TRAUNSPURGER, WALTER ; MARQUES, JOÃO CARLOS . Do nematode and macrofauna assemblages provide similar ecological assessment information?. Ecological Indicators , v. 14, p. 124-137, 2012.

• PÉREZ-DOMÍNGUEZ, RAFAEL ; MACI, STEFANO ; COURRAT, ANNE ; LEPAGE, MARIO ; BORJA, ANGEL ; URIARTE, AINHIZE ; NETO, JOAO M. ; CABRAL, HENRIQUE ; ST.RAYKOV, VIOLIN ; FRANCO, ANITA ; ALVAREZ, MARÍA C. ; ELLIOTT, MIKE . Current developments on fish-based indices to assess ecological-quality status of estuaries and lagoons. Ecological Indicators , v. 23, p. 34-45, 2012.

• BORJA, ANGEL ; BARBONE, ENRICO ; BASSET, ALBERTO ; BORGERSEN, GUNHILD ; BRKLJACIC, MARIJANA ; ELLIOTT, MICHAEL ; GARMENDIA, JOXE MIKEL ; MARQUES, JOÃO CARLOS ; MAZIK, KRYSIA ; MUXIKA, IÑIGO ; Neto, João Magalhães ; NORLING, KARL ; RODRÍGUEZ, J. GERMÁN ; ROSATI, ILARIA ; RYGG, BRAGE ; TEIXEIRA, HELIANA ; TRAYANOVA, ANTOANETA . Response of single benthic metrics and multi-metric methods to anthropogenic pressure gradients, in five distinct European coastal and transitional ecosystems. Marine Pollution Bulletin. , v. 62, p. 499-513, 2011.

• PINTO, R. ; Patrício, J. ; NETO, J.M. ; Salas, F. ; J.C. Marques . Assessing estuarine quality under the ecosystem services scope: ecological and socioeconomic aspects.. Ecological Complexity (Print) , v. 7, p. 289-402, 2010.

• Neto, João Magalhães ; TEIXEIRA, HELIANA ; PATRÍCIO, JOANA ; BAETA, ALEXANDRA ; VERÍSSIMO, HELENA ; PINTO, RUTE ; MARQUES, JOÃO CARLOS . The Response of Estuarine Macrobenthic Communities to Natural- and Human-Induced Changes: Dynamics and Ecological Quality. Estuaries and Coasts , v. 33, p. 1327-1339, 2010.

• COUTO, THIAGO ; PATRÍCIO, JOANA ; NETO, JOÃO M. ; CEIA, FILIPE R. ; FRANCO, JOÃO ; MARQUES, JOÃO CARLOS . The influence of mesh size in environmental quality assessment of estuarine macrobenthic communities. Ecological Indicators , v. 10, p. 1162-1173, 2010.

• ALVES, ANA SOFIA ; ADÃO, HELENA ; PATRÍCIO, JOANA ; Neto, João Magalhães ; COSTA, MARIA JOSÉ ; MARQUES, JOÃO CARLOS . Spatial distribution of subtidal meiobenthos along estuarine gradients in two southern European estuaries (Portugal). Journal of the Marine Biological Association of the United Kingdom (Print) , v. 89, p. 1529, 2009.

• GAREL, ERWAN ; NUNES, SUSANA ; Neto, João Magalhães ; FERNANDES, RODRIGO ; NEVES, RAMIRO ; MARQUES, JOÃO CARLOS ; FERREIRA, ÓSCAR . The autonomous Simpatico system for real-time continuous water-quality and current velocity monitoring: examples of application in three Portuguese estuaries. Geo-Marine Letters , v. 29, p. 331-341, 2009.

• TEIXEIRA, HELIANA ; Neto, João Magalhães ; PATRÍCIO, JOANA ; VERÍSSIMO, HELENA ; PINTO, RUTE ; SALAS, FUENSANTA ; MARQUES, JOÃO CARLOS . Quality assessment of benthic macroinvertebrates under the scope of WFD using BAT, the Benthic Assessment Tool. Marine Pollution Bulletin. , v. 58, p. 1477-1486, 2009.

• PATRÍCIO, JOANA ; Neto, João Magalhães ; TEIXEIRA, HELIANA ; SALAS, FUENSANTA ; MARQUES, JOÃO CARLOS . The robustness of ecological indicators to detect long-term changes in the macrobenthos of estuarine systems. Marine Environmental Research , v. 68, p. 25-36, 2009.

• ADÃO, HELENA ; ALVES, ANA SOFIA ; PATRÍCIO, JOANA ; Neto, João Magalhães ; COSTA, MARIA JOSÉ ; MARQUES, JOÃO CARLOS . Spatial distribution of subtidal Nematoda communities along the salinity gradient in southern European estuaries. Acta Oecologica (Montrouge) , v. 35, p. 287-300, 2009.

• PINTO, RUTE ; PATRÍCIO, JOANA ; BAETA, ALEXANDRA ; FATH, BRIAN D. ; NETO, JOÃO M. ; MARQUES, JOÃO CARLOS . Review and evaluation of estuarine biotic indices to assess benthic condition. Ecological Indicators , v. 9, p. 1-25, 2009.

• TEIXEIRA, HELIANA ; SALAS, FUENSANTA ; NETO, JOÃO M. ; PATRÍCIO, JOANA ; PINTO, RUTE ; VERÍSSIMO, HELENA ; GARCÍA-CHARTON, JOSÉ A. ; MARCOS, CONCEPCIÓN ; PÉREZ-RUZAFA, ANGÉL ; MARQUES, JOÃO C. . Ecological indices tracking distinct impacts along disturbance-recovery gradients in a temperate NE Atlantic Estuary - Guidance on reference values. Estuarine, Coastal and Shelf Science (Print) , v. 80, p. 130-140, 2008.

• MARTINHO, F. ; LEITÃO, R. ; NETO, J. M. ; CABRAL, H. ; LAGARDÈRE, F. ; PARDAL, M. A. . Estuarine colonization, population structure and nursery functioning for 0-group sea bass (Dicentrarchus labrax), flounder (Platichthys flesus) and sole (Solea solea) in a mesotidal temperate estuary. Journal of Applied Ichthyology , v. 24, p. 229-237, 2008.

• DE PAZ, L. ; NETO, J.M. ; MARQUES, J.C. ; LABORDA, A.J. . Response of intertidal macrobenthic communities to long term human induced changes in the Eo estuary (Asturias, Spain): Implications for environmental management. Marine Environmental Research , v. 66, p. 288-299, 2008.

• TEIXEIRA, H. ; Salas, F. ; BORJA, Á. ; NETO, J.M. ; MARQUES, J.C. . A benthic perspective in assessing the ecological status of estuaries: The case of the Mondego estuary (Portugal). Ecological Indicators , v. 8, p. 404-416, 2008.

• Neto, João Magalhães ; FLINDT, MOGENS RENÉ ; MARQUES, JOÃO CARLOS ; PARDAL, MIGUEL ÂNGELO . Modelling nutrient mass balance in a temperate meso-tidal estuary: Implications for management. Estuarine, Coastal and Shelf Science (Print) , v. 76, p. 175-185, 2008.

• BOUSLAMA, A. ; NETO, J. M. ; CHARFI-CHEIKHROUHA, F. ; J.C. Marques . Biology, population dynamics and secondary production of Talitrus saltator (Amphipoda, Talitridae) at Korba beach (east coast of Tunisia).. Crustaceana (Leiden. Print) , v. 80, p. 1103-1119, 2007.

• MARTINHO, F. ; LEITÃO, R. ; VIEGAS, I. ; DOLBETH, M. ; NETO, J.M. ; CABRAL, H.N. ; PARDAL, M.A. . The influence of an extreme drought event in the fish community of a southern Europe temperate estuary. Estuarine, Coastal and Shelf Science (Print) , v. 75, p. 537-546, 2007.

• MARTINHO, FILIPE ; LEITÃO, R. ; NETO, J. M. ; CABRAL, H. N. ; MARQUES, J. C. ; PARDAL, M. A. . The use of nursery areas by juvenile fish in a temperate estuary, Portugal. Hydrobiologia (The Hague. Print) , v. 587, p. 281-290, 2007.

• LEITÃO, RICARDO ; MARTINHO, F. ; CABRAL, H. N. ; NETO, J. M. ; JORGE, I. ; PARDAL, M. A. . The fish assemblage of the Mondego estuary: composition, structure and trends over the past two decades. Hydrobiologia (The Hague. Print) , v. 587, p. 269-279, 2007.

• VIEGAS, I. ; MARTINHO, F. ; João Neto ; PARDAL, M. A. . Population dynamics, distribution and secondary production of the brown shrimp Crangon crangon (L.) in a southern European estuary. Latitudinal variations. Scientia Marina , v. 71, p. 451-460, 2007.

• Patrício, J. ; NETO, J.M. ; TEIXEIRA, H. ; MARQUES, J.C. . Opportunistic macroalgae metrics for transitional waters. Testing tools to assess ecological quality status in Portugal. Marine Pollution Bulletin. , v. 54, p. 1887-1896, 2007.

• MARTINS, IRENE ; LOPES, R.J. ; LILLEB , A.I. ; NETO, J.M. ; PARDAL, M.A. ; FERREIRA, J.G. ; MARQUES, J.C. . Significant variations in the productivity of green macroalgae in a mesotidal estuary: Implications to the nutrient loading of the system and the adjacent coastal area. Marine Pollution Bulletin. , v. 54, p. 678-690, 2007.

• FERREIRA, S. M. ; BRANDÃO, A. ; BAETA, A. ; NETO, J. M. ; LILLEB , A. I. ; JENSEN, K. T. ; PARDAL, M. A. . Effects of restoration management on the estuarine isopod Cyathura carinata: mediation by trematodes and habitat change. Marine Biology (Berlin) , v. 151, p. 109-118, 2007.

• Salas, F. ; MARCOS, C. ; NETO, J.M. ; Patrício, J. ; PÉREZ-RUZAFA, A. ; MARQUES, J.C. . User-friendly guide for using benthic ecological indicators in coastal and marine quality assessment. Ocean & Coastal Management , v. 49, p. 308-331, 2006.

• MARQUES, S. C. ; AZEITEIRO, U. M. ; J.C. Marques ; NETO, J. M. ; PARDAL, M. A. . Zooplankton and ichthyoplankton communities in a temperate estuary: spatial and temporal patterns. Journal of Plankton Research , v. 28, p. 297-312, 2006.

• LEITÃO, R. ; MARTINHO, F. ; NETO, J.M. ; CABRAL, H. ; MARQUES, J.C. ; PARDAL, M.A. . Feeding ecology, population structure and distribution of Pomatoschistus microps (Kr yer, 1838) and Pomatoschistus minutus (Pallas, 1770) in a temperate estuary, Portugal. Estuarine, Coastal and Shelf Science (Print) , v. 66, p. 231-239, 2006.

• LILLEB , A.I. ; NETO, J.M. ; MARTINS, I. ; VERDELHOS, T. ; LESTON, S. ; CARDOSO, P.G. ; FERREIRA, S.M. ; MARQUES, J.C. ; PARDAL, M.A. . Management of a shallow temperate estuary to control eutrophication: The effect of hydrodynamics on the system s nutrient loading. Estuarine, Coastal and Shelf Science (Print) , v. 65, p. 697-707, 2005.

• BAETA, A. ; CABRAL, H.N. ; NETO, J.M. ; MARQUES, J.C. ; PARDAL, M.A. . Biology, population dynamics and secondary production of the green crab Carcinus maenas (L.) in a temperate estuary. Estuarine, Coastal and Shelf Science (Print) , v. 65, p. 43-52, 2005.

• MARTINS, I. ; NETO, J.M. ; FONTES, M.G. ; MARQUES, J.C. ; PARDAL, M.A. . Seasonal variation in short-term survival of Zostera noltii transplants in a declining meadow in Portugal. Aquatic Botany , v. 82, p. 132-142, 2005.

• VERDELHOS, T. ; NETO, J.M. ; MARQUES, J.C. ; PARDAL, M.A. . The effect of eutrophication abatement on the bivalve Scrobicularia plana. Estuarine, Coastal and Shelf Science (Print) , v. 63, p. 261-268, 2005.

• LILLEB , A.I. ; NETO, J.M. ; FLINDT, M.R. ; MARQUES, J.C. ; PARDAL, M.A. . Phosphorous dynamics in a temperate intertidal estuary. Estuarine, Coastal and Shelf Science (Print) , v. 61, p. 101-109, 2004.

• SALAS, F ; Neto, J.M ; BORJA, A ; MARQUES, J.C . Evaluation of the applicability of a marine biotic index to characterize the status of estuarine ecosystems: the case of Mondego estuary (Portugal). Ecological Indicators , v. 4, p. 215-225, 2004.

• BASTVIKEN, SOFIA KALLNER ; ERIKSSON, PEDER G. ; MARTINS, IRENE ; NETO, JOÃO M. ; LEONARDSON, LARS ; TONDERSKI, KARIN . Potential Nitrification and Denitrification on Different Surfaces in a Constructed Treatment Wetland. JOURNAL OF ENVIRONMENTAL QUALITY , v. 32, p. 2414, 2003.

• LILLEB , ANA I ; PARDAL, MIGUEL A ; NETO, JOÃO M ; MARQUES, JOÃO C . Salinity as the major factor affecting Scirpus maritimus annual dynamics. Aquatic Botany , v. 77, p. 111-120, 2003.

• DUARTE, A. S. ; PINHO, J. L. ; PARDAL, M. A. ; NETO, J.M. ; VIEIRA, J.P. ; SANTOS, F. S. . Effect of residence times on River Mondego estuary eutrophication vulnerability. Water Science and Technology , v. 44, p. 329-336, 2001.

• J.C. Marques ; SALAS, F ; PATRÍCIO, J. ; TEIXEIRA, H. ; NETO, J.M. . Ecological Indicators for Coastal and Estuarine Environmental Assessment. A user guide.. 00. ed. UK: WIT PRESS, 2009. v. 1.

• PINTO, R. ; Patrício, J. ; SALAS, F ; NETO, J.M. ; MARQUES, J. C. . Bacia do Mondego. Ecossistemas e Bem-Estar Humano. Avaliação para Portugal do Millennium Ecosystem Assessment. 00ed.: Escolar Editora, 2009, v. 1, p. 513-557.

• FLINDT, M.R. ; NETO, J.M. ; AMOS, C. A. ; PARDAL, M. A. ; BERGAMASCO, A. ; PEDERSEN, C.B. ; ANDERSEN, F.O. . Plant bound nutrient transport. Mass transport in estuaries and lagoons.. In: S.L. Nielsen; G.T. Banta; M.F. Pedersen. (Org.). The influence of primary producers on estuarine nutrient cycling: The Fate of Nutrient Biomass.. 00ed.: Kluwer Academic Press, Series: Aquatic Ecology, 2004, v. , p. 93-128.

• LILLEB , A.I. ; NETO, J.M. ; PARDAL, M.A. ; FLINDT, M.R. ; MARQUES, J.C. . The role of Spartina maritima and Scirpus maritimus to sediment pore-water profiles, and possible implications to the Mondego estuary nutrient dynamics.. In: Pardal, M.A.; J.C. Marques; M.A.S. Graça. (Org.). Aquatic ecology of the Mondego river basin. Global importance of local experience.. 00ed.Coimbra, Portugal: Imprensa da Universidade de Coimbra, 2002, v. 1, p. 325-338.

• MARTINS, I. ; PARDAL, M.A. ; METELO, I. ; NETO, J.M. ; OLIVEIRA, J. M. ; MARQUES, J.C. . Enteromorpha spp. (Ulvales: Chlorophyta) growth in the south arm of the Mondego estuary: field growth rates with and without macrofaunal grazer effects.. In: Pardal, M.A.; J.C. Marques; M.A.S. Graça. (Org.). Aquatic ecology of the Mondego river basin. Global importance of local experience.. 00ed.Coimbra, Portugal: Imprensa da Universidade de Coimbra, 2002, v. 1, p. 301-312.

• LILLEB , A.I. ; PARDAL, M.A. ; FLINDT, M.R. ; NETO, J.M. ; MACEDO, F. ; MARTINS, I. ; MARQUES, J.C. . Nutrient dynamics in the intertidal pools of the Mondego estuary. IV Possible contribution to dissolved inorganic phosphate loading.. In: Pardal, M.A.; J.C. Marques; M.A.S. Graça. (Org.). Aquatic ecology of the Mondego river basin. Global importance of local experience.. 00ed.Coimbra, Portugal: Imprensa da Universidade de Coimbra, 2002, v. 1, p. 287-300.

• LILLEB , A.I. ; FLINDT, M.R. ; PARDAL, M.A. ; MARTINS, I. ; NETO, J.M. ; MARQUES, J.C. . Nutrient dynamics in the intertidal pools of the Mondego estuary. II Seasonal efflux of PO4-P and NH4-N in bare bottom and vegetated pools.. In: Pardal, M.A.; J.C. Marques; M.A.S. Graça. (Org.). Aquatic ecology of the Mondego river basin. Global importance of local experience.. 00ed.Coimbra, Portugal: Imprensa da Universidade de Coimbra, 2002, v. 1, p. 257-271.

• DUARTE, A. S. ; PINHO, J. L. ; PARDAL, M.A. ; NETO, J.M. ; VIEIRA, J.P. ; SANTOS, F. S. . Hydrodynamic modelling for Mondego estuary water quality managenent.. In: Pardal, M.A.; J.C. Marques; M.A.S. Graça. (Org.). Aquatic ecology of the Mondego river basin. Global importance of local experience.. 00ed.Coimbra, Portugal: Imprensa da Universidade de Coimbra, 2002, v. 1, p. 29-42.

• MODESTO, V. ; FRANCO, J. N. ; SOUSA, R. ; PATRÍCIO, J. ; J.C. Marques ; NETO, J.M. . Spatial and temporal dynamics of Corbicula flumínea (Müller, 1774) in relation to environmental variable in teh Mondego estuary (Portugal). Journal of Molluscan Studies , 2013.

Projetos de pesquisa

• 2013 - Atual

  Mamanguape Estuary: biological Baseline and Ecological Model - MEBEM, Descrição: MEBEM (MCTI/CNPq Nº 14/2013 Proc. 486881/2013-0) Support: Funding programme / agency: Chamada Pública MCTI/CNPq Nº 14/2013 - Universal (BR). Funding: 119,809 R$.. , Situação: Em andamento; Natureza: Pesquisa. , Alunos envolvidos: Doutorado: (7) . , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Integrante / Ierecê Maria de Lucena Rosa - Integrante / Josias Henrique de Amorim Xavier - Integrante / Tacyana Pereira Ribeiro de Oliveira - Integrante / André Luiz Machado Pessanha - Integrante / Ana Marta Mendes Gonçalves - Integrante / Marcos Mateus - Integrante.

• 2012 - Atual

  DEVelopment Of innovative Tools for understanding marine biodiversity and assessing good Environmental Status - DEVOTES, Descrição: Coordination: Ángel Borja (AZTI- Tecnalia / Marine Research Division, Spain). The project aims at improving understanding of human activities impacts (cumulative, synergistic, antagonistic) and variations due to climate change on marine biodiversity, using long-term series (pelagic and benthic). A major aim of DEVOTES is to test the indicators proposed by the EC, and develop new ones for assessment at species, habitats and ecosystems level, for the status classification of marine waters, integrating the indicators into a unified assessment of the biodiversity and the cost-effective implementation of the indicators (i.e. by defining monitoring and assessment strategies). DEVOTES is thus also intended to develop/test/validate innovative integrative modelling tools to further strengthen our understanding of ecosystem and biodiversity changes (space & time); such tools can be used by statutory bodies, Small Medium Enterprises and marine research institutes to monitor biodiversity, applying both empirical and automatic data acquisition. This objective will demonstrate the utility of innovative monitoring systems capable of efficiently providing data on a range of parameters (including those from non-EU countries), used as indicators of Good Environmental Status, and for the integration of the information into a unique assessment.. , Situação: Em andamento; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Integrante / João Carlos Marques - Integrante / Angel Borja - Coordenador / Mike Elliott - Integrante.

• 2012 - Atual

  Desenvolvimento de metodologias rápidas para a classificação do estado das massas de água de transição da Galiza e do Norte de Portugal, no âmbito do projecto Team-Miño Transferencia de herramientas para la evaluatión, ordenatión, gestión y educación an, Descrição: Confirmation of the typology of the systems included in the study area and classification in terms of ecological quality status of their water bodies. , Situação: Em andamento; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Integrante / Ricardo Beiras - Integrante.

• 2011 - 2012

  Monitorização das comunidades biológicas costeiras e estuarinas associada à intervenção do prolongamento do molhe norte do porto da Figueira da Foz, no período pós- obra., Descrição: Avaliação de eventuais perturbações nas comunidades biológicas do estuário do Mondego associadas ao prolongamento do molhe norte do porto da Figueira da Foz, na fase após a conclusão da obra.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Coordenador / VERÍSSIMO, HELENA - Integrante / Ana Carla Garcia - Integrante.

• 2011 - Atual

  ESTUÁRIOS DO MINHO, MONDEGO E MIRA, observatórios: Variações do estado ecológico a longo prazo originadas por pressões naturais e humanas. implicações na gestão e recuperação - 3M_RECITAL, Descrição: Monitorizados ao longo de quase duas décadas, sendo talvez os mais bem estudados da costa Portuguesa, os estuários do Minho, Mondego e Mira foram seleccionados como alvo deste projecto L-TER. A justificação de um programa L-TER com foco nestes três sistemas passa pela necessidade de compreender os processos em curso neles, assim como a sua evolução sob os efeitos combinados das pressões humanas e alterações climáticas, de forma a contribuir para a sua gestão e utilização sustentável. Os objectivos são: 1. Identificar variações a longo prazo dos habitats e comunidades biológicas; 2. Caracterizar as variações a longo prazo do estado ecológico, relacionando-o com variações naturais (eventos climáticos extremos, mudança climática) e de origem antropogénica; 3. Compreender as variações a longo prazo a nível do funcionamento dos três ecossistemas, tendo em conta nutrientes e fluxos na cadeia trófica; 4. Comparar e integrar dados, que servirão como base para a construção de cenários evolutivos e para produzir recomendações relativos ao uso sustentável dos três estuários.. , Situação: Em andamento; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Coordenador.

• 2011 - Atual

  INPACTAR- - Long-term effects of intersexuality and other impacts on populations of Echinogammarus marinus, Situação: Em andamento; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Integrante / MARTINS, I. - Coordenador.

• 2009 - 2012

  Water bodies in Europe: Integrative Systems to assess Ecological status and Recovery WISER, Descrição: Nature of Research: the project aims to develop tools for integrated status assessment with a focus on lakes, coastal and transitional waters and will evaluate recovery processes for rivers, lakes, coastal and transitional waters. WISER aims at developing assessment methods for organism groups (fish, invertebrates and aquatic flora) and ecosystem types (lakes, coastal and transitional waters) for which sufficient methods are still lacking. WISER aims further to contribute to making existing assessment methods better comparable, i.e. to the intercalibration of assessment methods presently carried out by European countries. To support the development of recovery schemes WISER will model the effects of nutrient reduction and hydromorphological improvement on the ecological status of freshwater and coastal water ecosystems, taking the simultaneous effect of climate change into account. A special focus will be on estimating uncertainty in bioassessment and in modelling ecosystem response to restoration.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Integrante / Daniel Hering - Integrante.

• 2009 - 2010

  Monitorização das comunidades biológicas do estuário do Mondego, associada à intervenção do prolongamento do molhe Norte do Porto da Figueira da Foz na fase de obra., Descrição: Carlos Marques Nature of Research: Study of estuarine biological communities (macroalgae, segrass, mecroinvertebrates and fish communities) during the implementation work of the Figueira da Foz jetties increase. Comparison with previous data monitored by the IMAR University of Coimbra research team. . , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Coordenador.

• 2008 - 2012

  MODERN (MObility, Development and Energy use ReductioN), Descrição: the project is integrated in the CIVITAS Initiative that helps cities across Europe to implement and test innovative and integrated strategies which address energy, transport and environmental objectives. The MODERN project aimed to develop sustainable alternatives for public transportation along several European cities, without neglecting environmental issues and preservation concerns. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / Local Council Craiova Municipality - Integrante.

• 2008 - 2011

  Integrating molecular approaches into marine biodiversity research in Portugal: Implementing DNA barcoding and investigating phylogeographic patterns - LUSOMARBOL, Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Integrante / Filipe Costa - Integrante.

• 2008 - 2011

  System dynamic response to an ample artificial RE-establishment of the upstream CONNECTion between the two arms of the Mondego estuary (Portugal): Implications for recovery, ecological quality status, and management RECONNECT, Descrição: Avaliação da resposta do sistema estuarino do Mondego ao restabelecimento da comunicação a montantes entre os dois braços do estuário, levada a cabo com vista a diminuir os sintomas de eutrofização no braço sul., envolvendo: a) Validação de um modelo hidrodinâmico de circulação e qualidade da água previamente calibrado, b) Análise da resposta estrutural e funcional das comunidades biológicas; c) Avaliação dos efeitos a nível da qualidade ecológica do sistema através da aplicação de indicadores multi-métricos; d) Avaliar o estado de qualidade ecológica do sistema no contexto da Directiva-Quadro da Água.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Coordenador.

• 2008 - 2011

  Effects of extreme freshwater input fluctuations on the ecological status assessment in estuarine ecosystem: The benthic perspective EXTREMIS, Descrição: Utilização das comunidades de macroinvertebrados bentónicos na avaliação da qualidade ecológica da água dos estuários no âmbito da Directiva-Quadro da Água (2000/60/CE). Desenvolvimento de metodologias de classificação em estuários que apresentam variações sazonais muito acentuadas. Avaliação dos efeitos dos caudais dulciaquícolas e da redução salina associada, assim como de períodos de seca acentuados e do aumento de salinidade associado, sobre as comunidades de macroinvertebrados bentónicos de dois estuários portugueses (Mondego e Mira) com diferentes impactos antropogénicos.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Integrante / PATRÍCIO, J. - Coordenador.

• 2005 - 2008

  Sustainable management of Mediterranean coastal fresh and transitional water bodies: a socioeconomic and environmental analysis of changes and trends to enhance and sustain stakeholders benefits - WADI, Descrição: Estudo da influência das práticas agrícolas e medidas actuais de gestão da água sobre as populações Mediterrânicas e o desenvolvimento sustentável das regiões, com especial incidência na qualidade das águas doces e águas de transição. Análise holística dos contextos sócio-económicos em sistemas alvo localizados em Marrocos, Tunísia, e Egipto. Utilização de abordagens participativas no estabelecimento das estratégias mais adequadas à racionalização de consumos e uso sustentável da água em regiões em que este recurso se caracteriza pela escassez, passando pelo estabelecimento de cenários alternativos aos actualmente existentres. Potencial aplicação das conclusões a outras áreas da bacia Mediterrânica.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Integrante / Felicita Scapini - Integrante.

• 2004 - 2006

  Estudo piloto do estuário do Mondego no âmbito da implementação do Programa Objectivos de Qualidade Ambiental Eutrofização (EcoQOs-Eutro-OSPAR) Harmonização dos critérios OSPAR com a Directiva Quadro da Água Europeia., Descrição: Development of baseline for analysis, comparison and criteria harmonisation between OSPAR and European WFD Monitoring data will support interpretation and results harmonisation between both classification systems.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Coordenador.

• 2003 - 2005

  From river catchement areas to the sea: a comparative and integrated approach to the ecology of Mediterranean coastal zones for sustainable management - MEDCORE, Descrição: Characterisation of common environmental problems along North Africa coastal systems. Definition of guidelines helping the implementation of mitigation measures on those systems. Development of ecological indicators working as early indicators of environmental disturbance. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Integrante / Felicita Scapini - Integrante.

• 2003 - 2005

  Bases for the integrated sustainable management of Mediterranean sensitive coastal ecosystems., Descrição: Characterisation of common environmental problems along North Africa coastal systems. Definition of guidelines helping the implementation of mitigation measures on those systems. Development of ecological indicators working as early indicators of environmental disturbance.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Integrante / Felicita Scapini - Integrante.

• 2002 - 2004

  Caracterização do estuário do rio Mondego e estabelecimento de cenários de gestão em termos da qualidade da água e da integridade do ecossistema., Descrição: Definition of physical limits for the Mondego estuary and identification of pressures and impacts along it. Depth updating, evaluation of general quality and identification of sensible areas, based on hydrodynamics, water quality and macroinvertebrates populations. Development of a management scenario to control eutrophication based on a GIS platform.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Carlos Marques - Coordenador.

• 2000 - 2003

  Cross-shore processes on contrasting environments CROP, Descrição: Study of dynamic cross-shore processes in two contrasting environments in Portuguese coast (Aveiro, high exposed coast; Ria Formosa, moderate exposed coast). Seasonal changes comprising hydrodynamics, sedimentary alterations, morphology, and impacts on benthic populations and in socioeconomic aspects. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / João Alveirinho Dias - Integrante.

• 1998 - 1999

  Marine Science and Technology Programe: Feed-backs of estuarine circulation and transport of sediments on phytobenthos., Descrição: Characterisation and analysis of coastal resources, aiming to develop an holistic management platform for these systems (Venice Lagoon). Ecological modelling using benthic, hydrodynamics, sedimentary, water column transport, between other processes, will be developed and integrated in a GIS platform.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Coordenador / FLINDT, M.R. - Integrante / H.R. Wallingford - Integrante.

• 1996 - 1998

  Caracterização das comunidades bentónicas intertidais e subtidais em substrato rochoso da reserva das Berlengas. (Protocolo IMAR/ICN)., Situação: Concluído; Natureza: Pesquisa. , Integrantes: João Miguel Magalhães Neto - Integrante / PARDAL, M.A. - Coordenador / Inês Metelo - Integrante.