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PADILHA, MARINA ; BREJNROD, ASKER ; DANNESKIOLD-SAMSE, NIELS BANHOS ; Hoffmann, Christian ; IAUCCI, JULIA DE MELO ; CABRAL, VANESSA PEREIRA ; XAVIER-SANTOS, DOUGLAS ; TADDEI, CARLA ROMANO ; KRISTIANSEN, KARSTEN ; SAAD, SUSANA MARTA ISAY . Response of the Human Milk Microbiota to a Maternal Prebiotic Intervention Is Individual and Influenced by Maternal Age. Nutrients , v. 12, p. 1081, 2020.
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GOMES, ALINE CORADO ; Hoffmann, Christian ; MOTA, JOÃO FELIPE . Gut microbiota is associated with adiposity markers and probiotics may impact specific genera. EUROPEAN JOURNAL OF NUTRITION , v. 00, p. s00394-019-0203, 2019.
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BASSO, A M M ; DE CASTRO, R J A ; DE CASTRO, T B ; GUIMARÃES, H I ; POLEZ, V L P ; CARBONERO, E R ; POMIN, V H ; HOFFMANN, C ; GROSSI-DE-SA, M F ; TAVARES, A H ; BOCCA, A L . Immunomodulatory activity of -glucan-containing exopolysaccharides fromAuricularia auricular in phagocytes and mice infected with Cryptococcus neoformans. MEDICAL MYCOLOGY (OXFORD. ONLINE) , v. 00, p. myz042, 2019.
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BOCATO, MARIANA ZUCCHERATO ; BIANCHI XIMENEZ, JOÃO PAULO ; Hoffmann, Christian ; BARBOSA, FERNANDO . An overview of the current progress, challenges, and prospects of human biomonitoring and exposome studies. JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART B-CRITICAL REVIEWS , v. 22, p. 1-26, 2019.
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PADILHA, MARINA ; DANNESKIOLD-SAMSE, NIELS BANHOS ; BREJNROD, ASKER ; Hoffmann, Christian ; CABRAL, VANESSA PEREIRA ; IAUCCI, JULIA DE MELO ; SALES, CRISTIANE HERMES ; FISBERG, REGINA MARA ; CORTEZ, RAMON VITOR ; BRIX, SUSANNE ; TADDEI, CARLA ROMANO ; KRISTIANSEN, KARSTEN ; SAAD, SUSANA MARTA ISAY . The Human Milk Microbiota is Modulated by Maternal Diet. Microorganisms , v. 7, p. 502, 2019.
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GOMES, ALINE CORADO ; Hoffmann, Christian ; MOTA, JOÃO FELIPE . The human gut microbiota: metabolism and perspective in obesity. Gut Microbes , v. 10, p. 01-44, 2018.
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SIQUEIRA, ISAQUE MEDEIROS ; DE CASTRO, RAFFAEL JÚNIO ARAÚJO ; LEONHARDT, LUIZA CHAVES DE MIRANDA ; JERÔNIMO, MÁRCIO SOUSA ; SOARES, ALUÍZIO CARLOS ; RAIOL, TAINÁ ; NISHIBE, CHRISTIANE ; ALMEIDA, NALVO ; TAVARES, ALDO HENRIQUE ; Hoffmann, Christian ; BOCCA, ANAMELIA LORENZETTI . Modulation of the immune response by Fonsecaea pedrosoi morphotypes in the course of experimental chromoblastomycosis and their role on inflammatory response chronicity. PLoS Neglected Tropical Diseases , v. 11, p. e0005461, 2017.
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CASTOLDI, ANGELA ANDRADE-OLIVEIRA, VINICIUS AGUIAR, CRISTHIANE FAVERO AMANO, MARIANE TAMI LEE, JENNIFER MIYAGI, MARCELLI TERUMI LAT?NCIA, MARCELA TEATIN BRAGA, TARCIO TEODORO DA SILVA, MARINA BURGOS IGN?CIO, ALINE CAROLA CORREIA LIMA, JOANNA DARCK LOURES, FLAVIO V. ALBUQUERQUE, JOS? ANTONIO T. MAC?DO, MARINA BARGUIL ALMEIDA, RAFAEL RIBEIRO GAIARSA, JONAS W. LU?VANO-MART?NEZ, LUIS A. BELCHIOR, THIAGO HIYANE, MEIRE IOSHIE BROWN, GORDON D. MORI, MARCELO A. Hoffmann, Christian SEELAENDER, MAR?LIA FESTUCCIA, WILLIAN T. MORAES-VIEIRA, PEDRO MANOEL , et al. C?MARA, NIELS OLSEN SARAIVA ; Dectin-1 Activation Exacerbates Obesity and Insulin Resistance in the Absence of MyD88. Cell Reports , v. 19, p. 2272-2288, 2017.
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NI, J. ; SHEN, T. ; CHEN, E. ; Bittinger, K. ; BAILEY, AUBREY ; ROGGIANI, M. ; SIROTA-MADI, A. ; FRIEDMAN, ELLIOTS. ; CHAU, L. ; NISSIM, I. ; SCOTT, J. ; LAUDER, A. ; HOFFMANN, C. ; RIVAS, G. ; ALBENBERG, L. ; Baldassano, R. ; BRAUN, J. ; XAVIER, R. ; CLISH, C. ; YUDKOFF, M. ; Li, Hongzhe ; GOULLIAN, M. ; Bushman, F. ; Lewis, J. ; Wu, G. D. . A role for bacterial urease in gut dysbiosis and Crohns disease. Science Translational Medicine , v. 9, p. eaah6888, 2017.
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SKARKE, CARSTEN ; LAHENS, NICHOLAS F. ; RHOADES, SETH D. ; CAMPBELL, AMY ; Bittinger, Kyle ; BAILEY, AUBREY ; Hoffmann, Christian ; OLSON, RANDAL S. ; CHEN, LIHONG ; YANG, GUANGRUI ; PRICE, THOMAS S. ; MOORE, JASON H. ; Bushman, Frederic D. ; GREENE, CASEY S. ; GRANT, GREGORY R. ; WELJIE, AALIM M. ; FITZGERALD, GARRET A. . A Pilot Characterization of the Human Chronobiome. Scientific Reports , v. 7, p. 17141, 2017.
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THOMAS, ANDREW M. ; JESUS, ELIANE C. ; LOPES, ADEMAR ; AGUIAR, SAMUEL ; BEGNAMI, MARIA D. ; ROCHA, RAFAEL M. ; CARPINETTI, PAOLA AVELAR ; CAMARGO, ANAMARIA A. ; Hoffmann, Christian ; FREITAS, HELANO C. ; SILVA, ISRAEL T. ; NUNES, DIANA N. ; SETUBAL, JOÃO C. ; DIAS-NETO, EMMANUEL . Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling. Frontiers in Cellular and Infection Microbiology , v. 6, p. 179, 2016.
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CHEHOUD, CHRISTEL ; ALBENBERG, LINDSEY G. ; JUDGE, COLLEEN ; Hoffmann, Christian ; Grunberg, Stephanie ; Bittinger, Kyle ; BALDASSANO, ROBERT N. ; LEWIS, JAMES D. ; Bushman, Frederic D. ; Wu, Gary D. . Fungal Signature in the Gut Microbiota of Pediatric Patients With Inflammatory Bowel Disease. Inflammatory Bowel Diseases , v. 1, p. 1, 2015.
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LEWIS, JAMESD. ; CHEN, ERICZ. ; BALDASSANO, ROBERTN. ; OTLEY, ANTHONYR. ; GRIFFITHS, ANNEM. ; LEE, DALE ; Bittinger, Kyle ; BAILEY, AUBREY ; FRIEDMAN, ELLIOTS. ; Hoffmann, Christian ; ALBENBERG, LINDSEY ; Sinha, Rohini ; COMPHER, CHARLENE ; GILROY, ERIN ; Nessel, Lisa ; GRANT, AMY ; CHEHOUD, CHRISTEL ; Li, Hongzhe ; WU, GARYD. ; BUSHMAN, FREDERICD. . Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn?s Disease. Cell Host & Microbe , v. 18, p. 489-500, 2015.
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BENITEZ, ALAIN J ; Hoffmann, Christian ; MUIR, AMANDA B. ; DODS, KARA K. ; SPERGEL, JONATHAN M. ; Bushman, Frederic D. ; WANG, MEI-LUN . Inflammation-associated microbiota in pediatric eosinophilic esophagitis. Microbiome , v. 3, p. 23, 2015.
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Dollive, Serena ; Chen, Ying-Yu ; Grunberg, Stephanie ; Bittinger, Kyle ; Hoffmann, Christian ; Vandivier, Lee ; Cuff, Christopher ; Lewis, James D ; Wu, Gary D ; Bushman, Frederic D . Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment. Plos One , v. 8, p. e71806, 2013.
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LATULIPPE, MARIE E. ; MEHEUST, AGNÈS ; AUGUSTIN, LIVIA ; BENTON, DAVID ; BER ; BIRKETT, ANNE ; ELDRIDGE, ALISON L. ; FAINTUCH, JOEL ; Hoffmann, Christian ; MILLER JONES, JULIE ; KENDALL, CYRIL ; LAJOLO, FRANCO ; PERDIGON, GABRIELA ; ANTONIO PRIETO, PEDRO ; RASTALL, ROBERT A. ; SIEVENPIPER, JOHN L. ; SLAVIN, JOANNE ; WENZEL DE MENEZES, ELIZABETE . ILSI Brazil International Workshop on Functional Foods: a narrative review of the scientific evidence in the area of carbohydrates, microbiome, and health. Food & Nutrition Research , v. 57, p. 19214, 2013.
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Hoffmann, Christian ; Dollive, Serena ; Grunberg, Stephanie ; Chen, Jun ; Li, Hongzhe ; Wu, Gary D. ; LEWIS, JAMES D. ; Bushman, Frederic D. . Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents. Plos One , v. 8, p. e66019, 2013.
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Mei, Junjie ; Liu, Yuhong ; Dai, Ning ; Hoffmann, Christian ; Hudock, Kristin M. ; Zhang, Peggy ; Guttentag, Susan H. ; Kolls, Jay K. ; Oliver, Paula M. ; Bushman, Frederic D. ; Worthen, G. Scott . Cxcr2 and Cxcl5 regulate the IL-17/G-CSF axis and neutrophil homeostasis in mice. The Journal of Clinical Investigation , v. 122, p. JCI6058, 2012.
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Chen, J. ; Bittinger, K. ; Charlson, E. S. ; HOFFMANN, C. ; Lewis, J. ; Wu, G. D. ; Collman, R. G. ; Bushman, F. D. ; Li, H. . Associating microbiome composition with environmental covariates using generalized UniFrac distances. Bioinformatics (Oxford. Print) , v. 28, p. 2106-2113, 2012.
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Dollive, Serena ; Peterfreund, Gregory L ; Sherrill-Mix, Scott ; Bittinger, Kyle ; Sinha, Rohini ; Hoffmann, Christian ; Nabel, Christopher ; Hill, David A ; Artis, David ; Bachman, Michael A. ; Custers-Allen, Rebecca ; Grunberg, Stephanie ; Wu, Gary D ; Lewis, James D ; Bushman, Frederic D . A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples. GenomeBiology.com (London. Print) , v. 13, p. R60, 2012.
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Wu, G. D. ; Chen, J. ; HOFFMANN, C. ; Bittinger, K. ; Chen, Y.-Y. ; Keilbaugh, S. A. ; Bewtra, M. ; Knights, D. ; Walters, W. A. ; Knight, R. ; Sinha, R. ; Gilroy, E. ; Gupta, K. ; Baldassano, R. ; Nessel, L. ; Li, H. ; Bushman, F. D. ; Lewis, J. D. . Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes. Science (New York, N.Y.) , v. 334, p. 105-108, 2011.
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Wu, Gary D ; Lewis, James D ; Hoffmann, Christian ; Chen, Ying-Yu ; Knight, Rob ; Bittinger, Kyle ; Hwang, Jennifer ; Chen, Jun ; Berkowsky, Ronald ; Nessel, Lisa ; Li, Hongzhe ; Bushman, Frederic D . Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiology (Online) , v. 10, p. 206, 2010.
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Hill, D A ; HOFFMANN, C ; Abt, M C ; Du, Y ; Kobuley, D ; Kirn, T J ; Bushman, F D ; Artis, D . Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis.. Mucosal Immunology , v. 3, p. 148-158, 2010.
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Hildebrandt, Marie A. ; Hoffmann, Christian ; Sherrill Mix, Scott A. ; Keilbaugh, Sue A. ; Hamady, Micah ; Chen, Ying Yu ; Knight, Rob ; Ahima, Rexford S. ; Bushman, Frederic ; Wu, Gary D. . High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity. Gastroenterology (New York, N.Y. 1943) , v. 137, p. 1716-1724.e2, 2009.
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HOFFMANN, C. ; Hill, D. A. ; Minkah, N. ; Kirn, T. ; Troy, A. ; Artis, D. ; Bushman, F. . Community-Wide Response of the Gut Microbiota to Enteropathogenic Citrobacter rodentium Infection Revealed by Deep Sequencing. Infection and Immunity (Print) , v. 77, p. 4668-4678, 2009.
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McKenna, Philip ; Hoffmann, Christian ; Minkah, Nana ; Aye, Pyone Pyone ; Lackner, Andrew ; Liu, Zongzhi ; Lozupone, Catherine A. ; Hamady, Micah ; Knight, Rob ; Bushman, Frederic D. . The Macaque Gut Microbiome in Health, Lentiviral Infection, and Chronic Enterocolitis. PLoS Pathogens , v. 4, p. e20, 2008.
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Ciarlet, Max ; Hoffmann, Christian ; Lorusso, Eleonora ; Baselga, Rafael ; Cafiero, Maria Assunta ; Bányai, Krisztián ; Matthijnssens, Jelle ; Parreo, Viviana ; Grazia, Simona ; Buonavoglia, Canio ; Martella, Vito . Genomic characterization of a novel group A lamb rotavirus isolated in Zaragoza, Spain. Virus Genes , v. 37, p. 250-265, 2008.
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Bushman, Frederic D ; Hoffmann, Christian ; Ronen, Keshet ; Malani, Nirav ; Minkah, Nana ; Rose, Heather Marshall ; Tebas, Pablo ; Wang, Gary P . Massively parallel pyrosequencing in HIV research. AIDS (London) , v. 22, p. 1411-1415, 2008.
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HOFFMANN, C. ; Minkah, N. ; Leipzig, J. ; Wang, G. ; Arens, M. Q. ; Tebas, P. ; Bushman, F. D. . DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations. Nucleic Acids Research , v. 35, p. e91-e91, 2007.
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Ciuffi, A. ; Mitchell, R. ; HOFFMANN, C ; Leipzig, J. ; Shinn, P. ; Ecker, J. ; Bushman, F. . Integration Site Selection by HIV-Based Vectors in Dividing and Growth-Arrested IMR-90 Lung Fibroblasts. Molecular Therapy , v. 13, p. 366-373, 2006.
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Bushman, Frederic ; Lewinski, Mary ; Ciuffi, Angela ; Barr, Stephen ; Leipzig, Jeremy ; Hannenhalli, Sridhar ; HOFFMANN, C. . Genome-wide analysis of retroviral DNA integration. Nature Review, Microbiology , v. 3, p. 848-858, 2005.
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Ciuffi, Angela ; Llano, Manuel ; Poeschla, Eric ; Hoffmann, Christian ; Leipzig, Jeremy ; Shinn, Paul ; Ecker, Joseph R ; Bushman, Frederic . A role for LEDGF/p75 in targeting HIV DNA integration. Nature Medicine , v. 11, p. 1287-1289, 2005.
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Lewinski, Mary ; Bisgrove, D. ; Shinn, P. ; Chen, H. ; HOFFMANN, C ; Hannenhalli, Sridhar ; Verdin E. ; Berry C.C. ; Ecker, J. ; Bushman, F. . Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of Virology , v. 79, p. 6610-6619, 2005.
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Ahmed, AA. ; McFalls, J.M. ; HOFFMANN, C ; Filone, C.M. ; Stewart, S.M. ; Paragas, J. ; Khodjaev, S. ; Shermukhamedova, D. ; Schmaljohn, C.S. ; Doms, R.W. ; Bertolotti-Ciarlet, A. . Presence of broadly reactive and group-specific neutralizing epitopes on newly described isolates of Crimean-Congo hemorrhagic fever virus. Journal of General Virology , v. 86, p. 3327-3336, 2005.