Felipe da Veiga Leprevost

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Produções bibliográficas

• HUANG, CHEN CHEN, LIJUN SAVAGE, SARA R. EGUEZ, RODRIGO VARGAS DOU, YONGCHAO LI, YIZE DA VEIGA LEPREVOST, FELIPE JAEHNIG, ERIC J. LEI, JONATHAN T. WEN, BO SCHNAUBELT, MICHAEL KRUG, KARSTEN SONG, XIAOYU CIE'LIK, MARCIN CHANG, HUI-YIN WYCZALKOWSKI, MATTHEW A. LI, KAI COLAPRICO, ANTONIO LI, QING KAY CLARK, DAVID J. HU, YINGWEI CAO, LIWEI PAN, JIANBO WANG, YUEFAN CHO, KYUNG-CHO , et al. SHI, ZHIAO LIAO, YUXING JIANG, WEN ANURAG, MEENAKSHI JI, JIAYI YOO, SEUNGYEUL ZHOU, DANIEL CUI LIANG, WEN-WEI WENDL, MICHAEL VATS, PANKAJ CARR, STEVEN A. MANI, D.R. ZHANG, ZHEN QIAN, JIANG CHEN, XI S. PICO, ALEXANDER R. WANG, PEI CHINNAIYAN, ARUL M. KETCHUM, KAREN A. KINSINGER, CHRISTOPHER R. ROBLES, ANA I. AN, EUNKYUNG HILTKE, TARA MESRI, MEHDI THIAGARAJAN, MATHANGI WEAVER, ALISSA M. SIKORA, ANDREW G. LUBI'SKI, JAN WIERZBICKA, MA'GORZATA WIZNEROWICZ, MACIEJ SATPATHY, SHANKHA GILLETTE, MICHAEL A. MILES, GEORGE ELLIS, MATTHEW J. OMENN, GILBERT S. RODRIGUEZ, HENRY BOJA, EMILY S. DHANASEKARAN, SARAVANA M. DING, LI NESVIZHSKII, ALEXEY I. EL-NAGGAR, ADEL K. CHAN, DANIEL W. ZHANG, HUI ZHANG, BING AGARWAL, ANUPRIYA ANDERSON, MATTHEW L. AVANESSIAN, SHAYAN C. AVTONOMOV, DMITRY BATHE, OLIVER F. BIRGER, CHET BIRRER, MICHAEL J. BLUMENBERG, LILI BOCIK, WILLIAM E. BORATE, UMA BORUCKI, MELISSA BURKE, MEGHAN C. CAI, SHUANG CALINAWAN, ANNA PAMELA CERDA, SANDRA CHARAMUT, ALYSSA CHEN, LIN S. CHOWDHURY, SHRABANTI CLAUSER, KARL R. CULPEPPER, HOUSTON CZERNICKI, TOMASZ D'ANGELO, FULVIO DAY, JACOB DE YOUNG, STEPHANIE DEMIR, EMEK DING, FEI DOMAGALSKI, MARCIN J. DORT, JOSEPH C. DRUKER, BRIAN DUFFY, ELIZABETH DYER, MAUREEN EDWARDS, NATHAN J. ELBURN, KIMBERLY ERMAKOVA, TATIANA S. FENYO, DAVID FERRAROTTO, RENATA FRANCIS, ALICIA GABRIEL, STACEY GAROFANO, LUCIANO GEFFEN, YIFAT GETZ, GAD GOLDTHWAITE, CHARLES A. HANNICK, LINDA I. HARIHARAN, PUSHPA HAYES, DAVID N. HEIMAN, DAVID HINDENACH, BARBARA HOADLEY, KATHERINE A. HOSTETTER, GALEN HYRCZA, MARTIN JEWELL, SCOTT D. JONES, CORBIN D. KANE, M. HARRY KARZ, ALICIA KOTHADIA, RAMANI B. KREK, AZRA KUMAR-SINHA, CHANDAN LIU, TAO LIU, HONGWEI MA, WEIPING MALC, EWA MALOVANNAYA, ANNA MAREEDU, SAILAJA MARKEY, SANFORD P. MARRERO-OLIVERAS, ANNETTE MAUNGANIDZE, NICOLLETTE MCDERMOTT, JASON E. MCGARVEY, PETER B. MCGEE, JOHN MIECZKOWSKI, PIOTR MIGLIOZZI, SIMONA MONTGOMERY, REBECCA NEWTON, CHELSEA J. OZBEK, UMUT PAULOVICH, AMANDA G. PAYNE, SAMUEL H. PAZARDZHIKLIEV, DIMITAR DIMITROV PEROU, AMY M. PETRALIA, FRANCESCA PETRENKO, LYUDMILA PIEHOWSKI, PAUL D. PLACANTONAKIS, DMITRIS POLONSKAYA, LARISA PONOMAREVA, ELENA V. POTAPOVA, OLGA QI, LIQUN QU, NING RAMKISSOON, SHAKTI REVA, BORIS RICHEY, SHANNON ROBINSON, KARNA ROCHE, NANCY RODLAND, KARIN ROHRER, DANIEL C. RYKUNOV, DMITRY SCHADT, ERIC E. SHI, YAN SHUTACK, YVONNE SINGH, SHILPI SKELLY, TARA SMITH, RICHARD SOKOLL, LORI J. STAWICKI, JAKUB STEIN, STEPHEN E. SUH, JAMES SZOPA, WOJCIECH TABOR, DAVE TAN, DONGHUI TANSIL, DARLENE TEO, GUO CI THANGUDU, RATNA R. TOGNON, CRISTINA TRAER, ELIE TSANG, SHIRLEY TYNER, JEFFREY UM, KI SUNG VALLEY, DANA R. VASILEV, LYUBOMIR VALKOV VATANIAN, NEGIN VELVULOU, UMA VERNON, MICHAEL WESTBROOK, THOMAS F. WHITEAKER, JEFFREY R. WU, YIGE XU, MIDIE YAO, LIJUN YI, XINPEI YU, FENGCHAO ZAALISHVILI, KAKHABER ZAKHARTSEV, YURIY ZELT, ROBERT ZHAO, GRACE ZHU, JUN ; Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma. CANCER CELL , v. 1, p. 1, 2021.

• WEBER, SARAH R. ; ZHAO, YUANJUN ; GATES, CHRISTOPHER ; MA, JINGQUN ; DA VEIGA LEPREVOST, FELIPE ; BASRUR, VENKATESHA ; NESVIZHSKII, ALEXEY I. ; GARDNER, THOMAS W. ; SUNDSTROM, JEFFREY M. . Proteomic Analyses of Vitreous in Proliferative Diabetic Retinopathy: Prior Studies and Future Outlook. Journal of Clinical Medicine , v. 10, p. 2309, 2021.

• GOUDSMIT, CHRISTINE ; DA VEIGA LEPREVOST, FELIPE ; BASRUR, VENKATESHA ; PETERS, LILA ; NESVIZHSKII, ALEXEY ; WALLINE, HEATHER . Differences in Extracellular Vesicle Protein Cargo Are Dependent on Head and Neck Squamous Cell Carcinoma Cell of Origin and Human Papillomavirus Status. Cancers , v. 13, p. 3714, 2021.

• SATPATHY, SHANKHA KRUG, KARSTEN JEAN BELTRAN, PIERRE M. SAVAGE, SARA R. PETRALIA, FRANCESCA KUMAR-SINHA, CHANDAN DOU, YONGCHAO REVA, BORIS KANE, M. HARRY AVANESSIAN, SHAYAN C. VASAIKAR, SUHAS V. KREK, AZRA LEI, JONATHAN T. JAEHNIG, ERIC J. OMELCHENKO, TATIANA GEFFEN, YIFAT BERGSTROM, ERIK J. STATHIAS, VASILEIOS CHRISTIANSON, KAREN E. HEIMAN, DAVID I. CIESLIK, MARCIN P. CAO, SONG SONG, XIAOYU JI, JIAYI LIU, WENKE , et al. LI, KAI WEN, BO LI, YIZE GÜMÜ', ZEYNEP H. SELVAN, MYVIZHI ESAI SOUNDARARAJAN, RAMA VISAL, TANVI H. RASO, MARIA G. PARRA, EDWIN ROGER BABUR, ÖZGÜN VATS, PANKAJ ANAND, SHANKARA SCHRAINK, TOBIAS CORNWELL, MACINTOSH RODRIGUES, FERNANDA MARTINS ZHU, HOUXIANG MO, CHIA-KUEI ZHANG, YUPING DA VEIGA LEPREVOST, FELIPE HUANG, CHEN CHINNAIYAN, ARUL M. WYCZALKOWSKI, MATTHEW A. OMENN, GILBERT S. NEWTON, CHELSEA J. SCHURER, STEPHAN RUGGLES, KELLY V. FENYÖ, DAVID JEWELL, SCOTT D. THIAGARAJAN, MATHANGI MESRI, MEHDI RODRIGUEZ, HENRY MANI, SENDURAI A. UDESHI, NAMRATA D. GETZ, GAD SUH, JAMES LI, QING KAY HOSTETTER, GALEN PAIK, PAUL K. DHANASEKARAN, SARAVANA M. GOVINDAN, RAMASWAMY DING, LI ROBLES, ANA I. CLAUSER, KARL R. NESVIZHSKII, ALEXEY I. WANG, PEI CARR, STEVEN A. ZHANG, BING MANI, D.R. GILLETTE, MICHAEL A. GREEN, ALEX MOLINOLO, ALFREDO FRANCIS, ALICIA PAULOVICH, AMANDA G. KARNUTA, ANDRII COLAPRICO, ANTONIO HINDENACH, BARBARA PRUETZ, BARBARA L. KUBISA, BARTOSZ DRUKER, BRIAN J. HUYNH, CARISSA GOLDTHWAITE, CHARLES A. BIRGER, CHET KINSINGER, CHRISTOPHER R. JONES, CORBIN D. ROHRER, DAN VALLEY, DANA R. CHAN, DANIEL W. CHESLA, DAVID HANSEL, DONNA PONOMAREVA, ELENA V. DUFFY, ELIZABETH BURKS, ERIC SCHADT, ERIC E. FEDOROV, EUGENE S. AN, EUNKYUNG DING, FEI WILSON, GEORGE D. BATRA, HARSH ZHANG, HUI MAAS, JENNIFER E. ESCHBACHER, JENNIFER KETCHUM, KAREN A. RODLAND, KARIN D. HOADLEY, KATHERINE A. SUZUKI, KEI UM, KI SUNG QI, LIQUN BERNARD, LORI WIZNEROWICZ, MACIEJ WOJTY', MA'GORZATA DOMAGALSKI, MARCIN J. ELLIS, MATTHEW J. DYER, MAUREEN A. BORUCKI, MELISSA ANURAG, MEENAKSHI BIRRER, MICHAEL J. XU, MIDIE KROTEVICH, MIKHAIL ROCHE, NANCY EDWARDS, NATHAN J. VATANIAN, NEGIN MUCCI, NEIL R. MAUNGANIDZE, NICOLLETTE GABROVSKI, NIKOLAY POTAPOVA, OLGA FADARE, OLUWOLE GRADY, PAMELA MCGARVEY, PETER B. HARIHARAN, PUSHPA THANGUDU, RATNA R. MONTGOMERY, REBECCA PANDURENGAN, RENGANAYAKI SMITH, RICHARD D. WELSH, ROBERT J. MAREEDU, SAILAJA PAYNE, SAMUEL H. COTTINGHAM, SANDRA SINGH, SHILPI TSANG, SHIRLEY X. CAI, SHUANG GABRIEL, STACEY LIU, TAO HILTKE, TARA VASHIST, TANMAYI BAUER, THOMAS SOVENKO, VOLODYMYR TOURTELLOTTE, WARREN G. MA, WEIPING BOCIK, WILLIAM HASAN, WOHAIB JING, XIAOJUN TANG, XIMING LIAO, YUXING YVONNE SHUTACK ZHANG, ZHEN HANHAN, ZIAD ; A proteogenomic portrait of lung squamous cell carcinoma. CELL , v. 184, p. 4348-4371.e40, 2021.

• CAO, LIWEI HUANG, CHEN CUI ZHOU, DANIEL HU, YINGWEI LIH, T. MAMIE SAVAGE, SARA R. KRUG, KARSTEN CLARK, DAVID J. SCHNAUBELT, MICHAEL CHEN, LIJUN DA VEIGA LEPREVOST, FELIPE EGUEZ, RODRIGO VARGAS YANG, WEIMING PAN, JIANBO WEN, BO DOU, YONGCHAO JIANG, WEN LIAO, YUXING SHI, ZHIAO TEREKHANOVA, NADEZHDA V. CAO, SONG LU, RITA JUI-HSIEN LI, YIZE LIU, RUIYANG ZHU, HOUXIANG , et al. RONNING, PETER WU, YIGE WYCZALKOWSKI, MATTHEW A. EASWARAN, HARIHARAN DANILOVA, LUDMILA MER, ARVIND SINGH YOO, SEUNGYEUL WANG, JOSHUA M. LIU, WENKE HAIBE-KAINS, BENJAMIN THIAGARAJAN, MATHANGI JEWELL, SCOTT D. HOSTETTER, GALEN NEWTON, CHELSEA J. LI, QING KAY ROEHRL, MICHAEL H. FENYÖ, DAVID WANG, PEI NESVIZHSKII, ALEXEY I. MANI, D.R. OMENN, GILBERT S. BOJA, EMILY S. MESRI, MEHDI ROBLES, ANA I. RODRIGUEZ, HENRY BATHE, OLIVER F. CHAN, DANIEL W. HRUBAN, RALPH H. DING, LI ZHANG, BING ZHANG, HUI AMIN, MITUAL AN, EUNKYUNG AYAD, CHRISTINA BAUER, THOMAS BIRGER, CHET BIRRER, MICHAEL J. BOCA, SIMINA M. BOCIK, WILLIAM BORUCKI, MELISSA CAI, SHUANG CARR, STEVEN A. CERDA, SANDRA CHEN, HUAN CHEN, STEVEN CHESLA, DAVID CHINNAIYAN, ARUL M. COLAPRICO, ANTONIO COTTINGHAM, SANDRA DEREJSKA, MAGDALENA DHANASEKARAN, SARAVANA M. DOMAGALSKI, MARCIN J. DRUKER, BRIAN J. DUFFY, ELIZABETH DYER, MAUREEN A. EDWARDS, NATHAN J. ELLIS, MATTHEW J. ESCHBACHER, JENNIFER FRANCIS, ALICIA FRANCIS, JESSE GABRIEL, STACEY GABROVSKI, NIKOLAY GARDNER, JOHANNA GETZ, GAD GILLETTE, MICHAEL A. GOLDTHWAITE, CHARLES A. GRADY, PAMELA GUO, SHUAI HARIHARAN, PUSHPA HILTKE, TARA HINDENACH, BARBARA HOADLEY, KATHERINE A. HUANG, JASMINE JONES, CORBIN D. KETCHUM, KAREN A. KINSINGER, CHRISTOPHER R. KOZIAK, JENNIFER M. KUSNIERZ, KATARZYNA LIU, TAO LONG, JIANG MALLERY, DAVID MAREEDU, SAILAJA MATTEOTTI, RONALD MAUNGANIDZE, NICOLLETTE MCGARVEY, PETER B. MINOO, PARHAM PAKLINA, OXANA V. PAULOVICH, AMANDA G. PAYNE, SAMUEL H. POTAPOVA, OLGA PRUETZ, BARBARA QI, LIQUN ROCHE, NANCY RODLAND, KARIN D. ROHRER, DANIEL C. SCHADT, ERIC E. SHABUNIN, ALEXEY V. SHELTON, TROY SHUTACK, YVONNE SINGH, SHILPI SMITH, MICHAEL SMITH, RICHARD D. SOKOLL, LORI J. SUH, JAMES THANGUDU, RATNA R. TSANG, SHIRLEY X. UM, KI SUNG VALLEY, DANA R. VATANIAN, NEGIN WANG, WENYI WILSON, GEORGE D. WIZNEROWICZ, MACIEJ ZHANG, ZHEN ZHAO, GRACE ; Proteogenomic characterization of pancreatic ductal adenocarcinoma. CELL , v. 184, p. 5031-5052.e26, 2021.

• CHO, KYUNG-CHO ; CLARK, DAVID J. ; SCHNAUBELT, MICHAEL ; TEO, GUO CI ; LEPREVOST, FELIPE DA VEIGA ; BOCIK, WILLIAM ; BOJA, EMILY S. ; HILTKE, TARA ; NESVIZHSKII, ALEXEY I. ; ZHANG, HUI . Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry. ANALYTICAL CHEMISTRY , v. 92, p. 4217-4225, 2020.

• DJOMEHRI, SABRA I. ; GONZALEZ, MARIA E. ; DA VEIGA LEPREVOST, FELIPE ; TEKULA, SHILPA R. ; CHANG, HUI-YIN ; WHITE, MARISSA J. ; CIMINO-MATHEWS, ASHLEY ; BURMAN, BORIS ; BASRUR, VENKATESHA ; ARGANI, PEDRAM ; NESVIZHSKII, ALEXEY I. ; KLEER, CELINA G. . Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors. Nature Communications , v. 11, p. 1723, 2020.

• CHANG, HUI-YIN ; KONG, ANDY T. ; DA VEIGA LEPREVOST, FELIPE ; AVTONOMOV, DMITRY M. ; HAYNES, SARAH E. ; NESVIZHSKII, ALEXEY I. . Crystal-C: A Computational Tool for Refinement of Open Search Results. JOURNAL OF PROTEOME RESEARCH , v. 19, p. 2511-2515, 2020.

• GILLETTE, MICHAEL A. SATPATHY, SHANKHA CAO, SONG DHANASEKARAN, SARAVANA M. VASAIKAR, SUHAS V. KRUG, KARSTEN PETRALIA, FRANCESCA LI, YIZE LIANG, WEN-WEI REVA, BORIS KREK, AZRA JI, JIAYI SONG, XIAOYU LIU, WENKE HONG, RUNYU YAO, LIJUN BLUMENBERG, LILI SAVAGE, SARA R. WENDL, MICHAEL C. WEN, BO LI, KAI TANG, LAUREN C. MACMULLAN, MELANIE A. AVANESSIAN, SHAYAN C. KANE, M. HARRY , et al. NEWTON, CHELSEA J. CORNWELL, MACINTOSH KOTHADIA, RAMANI B. MA, WEIPING YOO, SEUNGYEUL MANNAN, RAHUL VATS, PANKAJ KUMAR-SINHA, CHANDAN KAWALER, EMILY A. OMELCHENKO, TATIANA COLAPRICO, ANTONIO GEFFEN, YIFAT MARUVKA, YOSEF E. DA VEIGA LEPREVOST, FELIPE WIZNEROWICZ, MACIEJ GÜMÜ', ZEYNEP H. VELUSWAMY, RAJWANTH R. HOSTETTER, GALEN HEIMAN, DAVID I. WYCZALKOWSKI, MATTHEW A. HILTKE, TARA MESRI, MEHDI KINSINGER, CHRISTOPHER R. BOJA, EMILY S. OMENN, GILBERT S. CHINNAIYAN, ARUL M. RODRIGUEZ, HENRY LI, QING KAY JEWELL, SCOTT D. THIAGARAJAN, MATHANGI GETZ, GAD ZHANG, BING FENYÖ, DAVID RUGGLES, KELLY V. CIESLIK, MARCIN P. ROBLES, ANA I. CLAUSER, KARL R. GOVINDAN, RAMASWAMY WANG, PEI NESVIZHSKII, ALEXEY I. DING, LI MANI, D.R. CARR, STEVEN A. WEBSTER, ALEX FRANCIS, ALICIA CHARAMUT, ALYSSA PAULOVICH, AMANDA G. PEROU, AMY M. GODWIN, ANDREW K. KARNUTA, ANDRII MARRERO-OLIVERAS, ANNETTE HINDENACH, BARBARA PRUETZ, BARBARA KUBISA, BARTOSZ DRUKER, BRIAN J. BIRGER, CHET JONES, CORBIN D. VALLEY, DANA R. ROHRER, DANIEL C. ZHOU, DANIEL CUI CHAN, DANIEL W. CHESLA, DAVID CLARK, DAVID J. RYKUNOV, DMITRY TAN, DONGHUI PONOMAREVA, ELENA V. DUFFY, ELIZABETH BURKS, ERIC J. SCHADT, ERIC E. BERGSTROM, ERIK J. FEDOROV, EUGENE S. MALC, EWA WILSON, GEORGE D. CHEN, HAI-QUAN KRZYSTEK, HALINA M. LIU, HONGWEI CULPEPPER, HOUSTON SUN, HUA ZHANG, HUI DAY, JACOB SUH, JAMES WHITEAKER, JEFFREY R. ESCHBACHER, JENNIFER MCGEE, JOHN KETCHUM, KAREN A. RODLAND, KARIN D. ROBINSON, KARNA HOADLEY, KATHERINE A. SUZUKI, KEI UM, KI SUNG ELBURN, KIM WANG, LIANG-BO CHEN, LIJUN HANNICK, LINDA QI, LIQUN SOKOLL, LORI J. WOJTY', MA'GORZATA DOMAGALSKI, MARCIN J. GRITSENKO, MARINA A. BEASLEY, MARY B. MONROE, MATTHEW E. ELLIS, MATTHEW J. DYER, MAUREEN BURKE, MEGHAN C. BORUCKI, MELISSA SUN, MENG-HONG ROEHRL, MICHAEL H. BIRRER, MICHAEL J. NOBLE, MICHAEL SCHNAUBELT, MICHAEL VERNON, MICHAEL CHAIKIN, MICHELLE KROTEVICH, MIKHAIL KHAN, MUNZIBA SELVAN, MYVIZHI ESAI ROCHE, NANCY EDWARDS, NATHAN J. VATANIAN, NEGIN POTAPOVA, OLGA GRADY, PAMELA MCGARVEY, PETER B. MIECZKOWSKI, PIOTR HARIHARAN, PUSHPA MADAN, RASHNA THANGUDU, RATNA R. SMITH, RICHARD D. WELSH, ROBERT J. ZELT, ROBERT MEHRA, ROHIT MATTEOTTI, RONALD MAREEDU, SAILAJA PAYNE, SAMUEL H. COTTINGHAM, SANDRA MARKEY, SANFORD P. CHUGH, SEEMA SMITH, SHALEIGH TSANG, SHIRLEY CAI, SHUANG BOCA, SIMINA M. CARTER, SONYA GABRIEL, STACEY DE YOUNG, STEPHANIE STEIN, STEPHEN E. SHANKAR, SUNITA KRUBIT, TANYA LIU, TAO SKELLY, TARA BAUER, THOMAS VELVULOU, UMA OZBEK, UMUT PETYUK, VLADISLAV A. SOVENKO, VOLODYMYR BOCIK, WILLIAM E. MAGGIO, WILLIAM W. CHEN, XI SHI, YAN WU, YIGE HU, YINGWEI LIAO, YUXING ZHANG, ZHEN SHI, ZHIAO ; Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma. CELL , v. 182, p. 200-225.e35, 2020.

• DA VEIGA LEPREVOST, FELIPE ; HAYNES, SARAH E. ; AVTONOMOV, DMITRY M. ; CHANG, HUI-YIN ; SHANMUGAM, AVINASH K. ; MELLACHERUVU, DATTATREYA ; KONG, ANDY T. ; NESVIZHSKII, ALEXEY I. . Philosopher: a versatile toolkit for shotgun proteomics data analysis. NATURE METHODS , v. 1, p. 1, 2020.

• HOANG, SONG MY ; KAMINSKI, NICOLE ; BHARGAVA, RAGINI ; BARROSO-GONZÁLEZ, JONATHAN ; LYNSKEY, MICHELLE L. ; GARCÍA-EXPÓSITO, LAURA ; RONCAIOLI, JUSTIN L. ; WONDISFORD, ANNE R. ; WALLACE, CALLEN T. ; WATKINS, SIMON C. ; JAMES, DOMINIC I. ; WADDELL, IAN D. ; OGILVIE, DONALD ; SMITH, KATE M. ; DA VEIGA LEPREVOST, FELIPE ; MELLACHAREVU, DATTATREYA ; NESVIZHSKII, ALEXEY I. ; LI, JIANFENG ; RAY-GALLET, DOMINIQUE ; SOBOL, ROBERT W. ; ALMOUZNI, GENEVIEVE ; O?SULLIVAN, RODERICK J. . Regulation of ALT-associated homology-directed repair by polyADP-ribosylation. NATURE STRUCTURAL & MOLECULAR BIOLOGY , v. 1, p. 1, 2020.

• PETRALIA, FRANCESCA TIGNOR, NICOLE REVA, BORIS KOPTYRA, MATEUSZ CHOWDHURY, SHRABANTI RYKUNOV, DMITRY KREK, AZRA MA, WEIPING ZHU, YUANKUN JI, JIAYI CALINAWAN, ANNA WHITEAKER, JEFFREY R. COLAPRICO, ANTONIO STATHIAS, VASILEIOS OMELCHENKO, TATIANA SONG, XIAOYU RAMAN, PICHAI GUO, YIRAN BROWN, MIGUEL A. IVEY, RICHARD G. SZPYT, JOHN GUHA THAKURTA, SANJUKTA GRITSENKO, MARINA A. WEITZ, KARL K. LOPEZ, GONZALO , et al. KALAYCI, SELIM GÜMÜ', ZEYNEP H. YOO, SEUNGYEUL DA VEIGA LEPREVOST, FELIPE CHANG, HUI-YIN KRUG, KARSTEN KATSNELSON, LIZABETH WANG, YING KENNEDY, JACOB J. VOYTOVICH, ULIANA J. ZHAO, LEI GAONKAR, KRUTIKA S. ENNIS, BRIAN M. ZHANG, BO BAUBET, VALERIE TAUHID, LAMIYA LILLY, JENA V. MASON, JENNIFER L. FARROW, BAILEY YOUNG, NATHAN LEARY, SARAH MOON, JAMIE PETYUK, VLADISLAV A. NAZARIAN, JAVAD ADAPPA, NITHIN D. PALMER, JAMES N. LOBER, ROBERT M. RIVERO-HINOJOSA, SAMUEL WANG, LIANG-BO WANG, JOSHUA M. BROBERG, MATILDA CHU, ROSALIE K. MOORE, RONALD J. MONROE, MATTHEW E. ZHAO, RUI SMITH, RICHARD D. ZHU, JUN ROBLES, ANA I. MESRI, MEHDI BOJA, EMILY HILTKE, TARA RODRIGUEZ, HENRY ZHANG, BING SCHADT, ERIC E. MANI, D.R. DING, LI IAVARONE, ANTONIO WIZNEROWICZ, MACIEJ SCHÜRER, STEPHAN CHEN, XI S. HEATH, ALLISON P. ROKITA, JO LYNNE NESVIZHSKII, ALEXEY I. FENYÖ, DAVID RODLAND, KARIN D. LIU, TAO GYGI, STEVEN P. PAULOVICH, AMANDA G. RESNICK, ADAM C. STORM, PHILLIP B. ROOD, BRIAN R. WANG, PEI FRANCIS, ALICIA MORGAN, ALLISON M. WAANDERS, ANGELA J. VIAENE, ANGELA N. BUCCOLIERO, ANNA MARIA CHINNAIYAN, ARUL M. LEONARD, CARINA A. KLINE, CASSIE N. CAPORALINI, CHIARA KINSINGER, CHRISTOPHER R. LI, CHUNDE KRAM, DAVID E. HANSON, DEREK APPERT, ELIZABETH KAWALER, EMILY A. RAABE, ERIC H. JACKSON, ERIC M. GREENFIELD, JEFFREY P. STONE, GABRIELLE S. GETZ, GAD GRANT, GERALD TEO, GUO CI POLLACK, IAN F. CAIN, JASON E. FOSTER, JESSICA B. PHILLIPS, JOANNA J. PALMA, JULY E. KETCHUM, KAREN A. RUGGLES, KELLY V. BLUMENBERG, LILI CORNWELL, MACINTOSH SARMADY, MAHDI DOMAGALSKI, MARCIN J. CIE'LIK, MARCIN P. SANTI, MARIARITA LI, MARILYN M. ELLIS, MATTHEW J. WYCZALKOWSKI, MATTHEW A. CONNORS, MEGHAN SCAGNET, MIRKO GUPTA, NALIN EDWARDS, NATHAN J. VITANZA, NICHOLAS A. VASKE, OLENA M. BECHER, OREN MCGARVEY, PETER B. FIRESTEIN, RON MUELLER, SABINE WINEBRAKE, SAMUEL G. DHANASEKARAN, SARAVANA MOHAN CAI, SHUANG PARTAP, SONIA PATTON, TATIANA LE, TOAN LORENTZEN, TRAVIS D. LIU, WENKE BOCIK, WILLIAM E. ; Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer. CELL , v. 1, p. 1, 2020.

• GEISZLER, DANIEL J. ; KONG, ANDY T. ; AVTONOMOV, DMITRY M ; YU, FENGCHAO ; DA VEIGA LEPREVOST, FELIPE ; NESVIZHSKII, ALEXEY I. . PTM-Shepherd: analysis and summarization of post-translational and chemical modifications from open search results. MOLECULAR & CELLULAR PROTEOMICS , v. 1, p. mcp.TIR120.002, 2020.

• CLARK, DAVID J. DHANASEKARAN, SARAVANA M. PETRALIA, FRANCESCA PAN, JIANBO SONG, XIAOYU HU, YINGWEI DA VEIGA LEPREVOST, FELIPE REVA, BORIS LIH, TUNG-SHING M. CHANG, HUI-YIN MA, WEIPING HUANG, CHEN RICKETTS, CHRISTOPHER J. CHEN, LIJUN KREK, AZRA LI, YIZE RYKUNOV, DMITRY LI, QING KAY CHEN, LIN S. OZBEK, UMUT VASAIKAR, SUHAS WU, YIGE YOO, SEUNGYEUL CHOWDHURY, SHRABANTI WYCZALKOWSKI, MATTHEW A. , et al. JI, JIAYI SCHNAUBELT, MICHAEL KONG, ANDY SETHURAMAN, SUNANTHA AVTONOMOV, DMITRY M. AO, MINGHUI COLAPRICO, ANTONIO CAO, SONG CHO, KYUNG-CHO KALAYCI, SELIM MA, SHIYONG LIU, WENKE RUGGLES, KELLY CALINAWAN, ANNA GÜMÜ', ZEYNEP H. GEIZLER, DANIEL KAWALER, EMILY TEO, GUO CI WEN, BO ZHANG, YUPING KEEGAN, SARAH LI, KAI CHEN, FENG EDWARDS, NATHAN PIERORAZIO, PHILLIP M. CHEN, XI STEVEN PAVLOVICH, CHRISTIAN P. HAKIMI, A. ARI BROMINSKI, GABRIEL HSIEH, JAMES J. ANTCZAK, ANDRZEJ OMELCHENKO, TATIANA LUBINSKI, JAN WIZNEROWICZ, MACIEJ LINEHAN, W. MARSTON KINSINGER, CHRISTOPHER R. THIAGARAJAN, MATHANGI BOJA, EMILY S. MESRI, MEHDI HILTKE, TARA ROBLES, ANA I. RODRIGUEZ, HENRY QIAN, JIANG FENYÖ, DAVID ZHANG, BING DING, LI SCHADT, ERIC CHINNAIYAN, ARUL M. ZHANG, ZHEN OMENN, GILBERT S. CIESLIK, MARCIN CHAN, DANIEL W. NESVIZHSKII, ALEXEY I. WANG, PEI ZHANG, HUI ; Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma. CELL , v. 179, p. 964-983.e31, 2019.

• WIPPEL, HELISA HELENA ; MALGARIN, JULIANE SOLDI ; INOUE, ALEXANDRE HARUO ; LEPREVOST, F. V. ; CARVALHO, PC ; GOLDENBERG, SAMUEL ; ALVES, LYSANGELA RONALTE . Unveiling the partners of the DRBD2-mRNP complex, an RBP in Trypanosoma cruzi and ortholog to the yeast SR-protein Gbp2. BMC MICROBIOLOGY , v. 19, p. N/A, 2019.

• HAWKINS, ALLEGRA G ; BASRUR, VENKATESHA ; DA VEIGA LEPREVOST, FELIPE ; PEDERSEN, ELISABETH ; SPERRING, COLIN ; NESVIZHSKII, ALEXEY I. ; LAWLOR, ELIZABETH R . The Ewing sarcoma secretome and its response to activation of Wnt/beta-catenin signaling. MOLECULAR & CELLULAR PROTEOMICS , v. 1, p. mcp.RA118.000596, 2018.

• GRUENING, BJORN ; SALLOU, OLIVIER ; MORENO, PABLO ; DA VEIGA LEPREVOST, FELIPE ; MÉNAGER, HERVÉ ; SNDERGAARD, DAN ; RÖST, HANNES ; SACHSENBERG, TIMO ; O'CONNOR, BRIAN ; MADEIRA, FÁBIO ; DOMINGUEZ DEL ANGEL, VICTORIA ; CRUSOE, MICHAEL R. ; VARMA, SUSHEEL ; BLANKENBERG, DANIEL ; JIMENEZ, RAFAEL C. ; PEREZ-RIVEROL, YASSET . Recommendations for the packaging and containerizing of bioinformatics software. F1000RESEARCH , v. 7, p. 742, 2018.

• PEREZ-RIVEROL, YASSET BAI, MINGZE DA VEIGA LEPREVOST, FELIPE SQUIZZATO, SILVANO PARK, YOUNG MI HAUG, KENNETH CARROLL, ADAM J SPALDING, DYLAN PASCHALL, JUSTIN WANG, MINGXUN DEL-TORO, NOEMI TERNENT, TOBIAS ZHANG, PENG BUSO, NICOLA BANDEIRA, NUNO DEUTSCH, ERIC W CAMPBELL, DAVID S BEAVIS, RONALD C SALEK, REZA M SARKANS, UGIS PETRYSZAK, ROBERT KEAYS, MARIA FAHY, EOIN SUD, MANISH SUBRAMANIAM, SHANKAR , et al. BARBERA, ARIANA JIMÉNEZ, RAFAEL C NESVIZHSKII, ALEXEY I SANSONE, SUSANNA-ASSUNTA STEINBECK, CHRISTOPH LOPEZ, RODRIGO VIZCAÍNO, JUAN A PING, PEIPEI HERMJAKOB, HENNING ; Discovering and linking public omics data sets using the Omics Discovery Index. NATURE BIOTECHNOLOGY , v. 35, p. 406-409, 2017.

• KONG, ANDY T ; LEPREVOST, FELIPE V ; AVTONOMOV, DMITRY M ; MELLACHERUVU, DATTATREYA ; NESVIZHSKII, ALEXEY I . MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics. NATURE METHODS , v. 14, p. 513-520, 2017.

• DA VEIGA LEPREVOST, FELIPE ; GRÜNING, BJÖRN A. ; ALVES AFLITOS, SAULO ; RÖST, HANNES L. ; USZKOREIT, JULIAN ; BARSNES, HARALD ; VAUDEL, MARC ; MORENO, PABLO ; GATTO, LAURENT ; WEBER, JONAS ; BAI, MINGZE ; JIMENEZ, RAFAEL C. ; SACHSENBERG, TIMO ; PFEUFFER, JULIANUS ; VERA ALVAREZ, ROBERTO ; GRISS, JOHANNES ; NESVIZHSKII, ALEXEY I. ; PEREZ-RIVEROL, YASSET . BioContainers: an open-source and community-driven framework for software standardization. BIOINFORMATICS , v. 1, p. 1, 2017.

• TREVISAN-SILVA, DILZA ; BEDNASKI, ALINE V. ; FISCHER, JULIANA S.G. ; VEIGA, SILVIO S. ; BANDEIRA, NUNO ; GUTHALS, ADRIAN ; MARCHINI, FABRICIO K. ; LEPREVOST, FELIPE V. ; BARBOSA, VALMIR C. ; SENFF-RIBEIRO, ANDREA ; CARVALHO, PAULO C. . A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom. Scientific Data , v. 4, p. 170090, 2017.

• KONG, ANDY T ; LEPREVOST, FELIPE V. ; AVTONOMOV, DMITRY M. ; MELLACHERUVU, DATTATREYA ; NESVIZHSKII, ALEXEY I. . Using MSFragger for ultrafast database searching. NATURE PROTOCOL EXCHANGE , v. 1, p. 1, 2017.

• BORGES, MARCIA H. ; FIGUEIREDO, SUELY G. ; LEPREVOST, FELIPE V. ; DE LIMA, MARIA ELENA ; DO N. CORDEIRO, MARTA ; DINIZ, MARCELO R.V. ; MORESCO, JAMES ; CARVALHO, PAULO C. ; YATES, JOHN R. . Venomous extract protein profile of Brazilian tarantula Grammostola inhering: searching for potential biotechnological applications. Journal of Proteomics (Print) , v. 1, p. 1, 2016.

• PEREZ-RIVEROL, YASSET ; GATTO, LAURENT ; WANG, RUI ; SACHSENBERG, TIMO ; USZKOREIT, JULIAN ; LEPREVOST, FELIPE DA VEIGA ; FUFEZAN, CHRISTIAN ; TERNENT, TOBIAS ; EGLEN, STEPHEN J. ; KATZ, DANIEL S. ; POLLARD, TOM J. ; KONOVALOV, ALEXANDER ; FLIGHT, ROBERT M. ; BLIN, KAI ; VIZCAÍNO, JUAN ANTONIO . Ten Simple Rules for Taking Advantage of Git and GitHub. PLOS Computational Biology (Online) , v. 12, p. e1004947, 2016.

• SANTOS, RENATA M. ; NOGUEIRA, FABIO C.S. ; BRASIL, ALINE A. ; CARVALHO, PAULO C. ; LEPREVOST, FELIPE V. ; DOMONT, GILBERTO B. ; ELEUTHERIO, ELIS C.A. . Quantitative proteomic analysis of the Saccharomyces cerevisiae industrial strains CAT-1 and PE-2. Journal of Proteomics (Print) , v. 1, p. 1, 2016.

• CARVALHO, PAULO C ; LIMA, DIOGO B ; LEPREVOST, FELIPE V ; SANTOS, MARLON D M ; FISCHER, JULIANA S G ; AQUINO, PRISCILA F ; MORESCO, JAMES J ; YATES, JOHN R ; BARBOSA, VALMIR C . Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0. Nature Protocols (Print) , v. 11, p. 102-117, 2015.

• CARVALHO, J. F. ; CANEDO, N. H. S. ; GONCALVES, K. M. S. ; CHIMELLI, M. C. ; FRANCA, M. ; LEPREVOST, F. V. ; AQUINO, P. F. ; CARVALHO, P. C. ; CARVALHO, M. G. C. . Proteome Analysis of Formalin-Fixed Paraffin-Embedded Tissues from a Primary Gastric Melanoma and its Meningeal Metastasis: A Case Report. Current Topics in Medicinal Chemistry (Print) , v. 14, p. 382-387, 2014.

• LEPREVOST, F. V. . Bio::DB::NextProt: A Perl Module for neXtProt Database Information Retrieval. PeerJ , v. 4, p. 1-3, 2014.

• LEPREVOST, F. V. ; VALENTE, R. H. ; BORGES, D. L. ; PERALES, J. ; MELANI, R. ; YATES, J. R.. ; BARBOSA, V. C. ; JUNQUEIRA, M. ; CARVALHO, P. C. . PepExplorer: a similarity-driven tool for analyzing de novo sequencing results. Molecular & Cellular Proteomics , v. 05, p. 01, 2014.

• LEPREVOST, FELIPE DA VEIGA ; BARBOSA, VALMIR C. ; FRANCISCO, EDUARDO L. ; PEREZ-RIVEROL, YASSET ; CARVALHO, PAULO C. . On best practices in the development of bioinformatics software. Frontiers in Genetics , v. 5, p. 1-3, 2014.

• BRUNORO, GISELLE VILLA FLOR ; CAMINHA, MARCELLE ALMEIDA ; DA SILVA FERREIRA, ANDRÉ TEIXEIRA ; DA VEIGA LEPREVOST, FELIPE ; CARVALHO, PAULO COSTA ; PERALES, JONAS ; VALENTE, RICHARD HEMMI ; MENNA-BARRETO, RUBEM FIGUEIREDO SADOK . Reevaluating the Trypanosoma cruzi proteomic map: the shotgun description of bloodstream trypomastigotes. Journal of Proteomics (Print) , v. 1, p. 1-23, 2014.

• PEREZ-RIVEROL, YASSET ; HERMJAKOB, HENNING ; KOHLBACHER, OLIVER ; MARTENS, LENNART ; CREASY, DAVID ; COX, JÜRGEN ; LEPREVOST, FELIPE ; SHAN, BAOZHEN PAUL ; PÉREZ-NUENO, VIOLETA I. ; BLAZEJCZYK, MICHAL ; PUNTA, MARCO ; VIERLINGER, KLEMENS ; VALIENTE, PEDRO ; LEON, KALET ; CHINEA, GLAY ; GUIROLA, OSMANY ; BRINGAS, RICARDO ; CABRERA, GLEYSIN ; GUILLEN, GERARDO ; PADRON, GABRIEL ; GONZALEZ, LUIS JAVIER ; BESADA, VLADIMIR . Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 Workshop report. Journal of Proteomics (Print) , v. 81, p. 28, 2013.

• BORGES, D. ; PEREZ-RIVEROL, Y. ; NOGUEIRA, F. C. S. ; DOMONT, G. B. ; NODA, J. ; LEPREVOST, F. D. V. ; BESADA, V. ; FRANCA, F. M. G. ; BARBOSA, V. C. ; SANCHEZ, A. ; CARVALHO, P. C. . Effectively addressing complex proteomic search spaces with peptide spectrum matching. Bioinformatics (Oxford. Print) , v. 30, p. 1, 2013.

• DA VEIGA LEPREVOST, FELIPE ; LIMA, DIOGO BORGES ; CRESTANI, JULIANA ; PEREZ-RIVEROL, YASSET ; ZANCHIN, NILSON ; BARBOSA, VALMIR C. ; CARVALHO, PAULO COSTA . Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics. Journal of Proteomics (Print) , v. 89, p. 179-182, 2013.

• DA VEIGA LEPREVOST, FELIPE ; BARBOSA, VALMIR C. ; CARVALHO, PAULO COSTA . Current Protocols in Bioinformatics. 1. ed. John Wiley & Sons, Inc., 2002. v. 1. 1p .

• YU, F. ; TEO, G. C. ; KONG, A. ; LEPREVOST, F. D. V. ; CHANG, H. ; NESVIZHSKII, A. I. . Comparison of Open-Search Tools. In: 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019, Atlanta. 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019.

• TEO, G. C. ; KONG, A. ; CHANG, H. ; LEPREVOST, F. D. V. ; AVTONOMOV, D. M. ; NESVIZHSKII, A. I. . Shifted Ions Searching and Other Improvements in the MSFragger Database Search Engine. In: 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019, Atlanta. 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019.

• AVTONOMOV, D. M. ; KONG, A. ; LEPREVOST, F. D. V. ; TEO, G. C. ; CHANG, H. ; NESVIZHSKII, A. I. . FragPipe: A Fast Proteomics Pipeline with MSFragger Search Engine at Heart;. In: 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019, Atlanta. 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019.

• CHANG, H. ; KONG, A. ; LEPREVOST, F. D. V. ; TEO, G. C. ; BASRUR, VENKATESHA ; NESVIZHSKII, A. I. . The implementation of MSFragger and Philosopher/ PeptideProphet nodes in Proteome Discoverer. In: 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019, Atlanta. 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019.

• LEPREVOST, F. D. V. ; SHANMUGAM, A. K. ; MELLACHERUVU, D. ; CHANG, H. ; AVTONOMOV, D. M. ; KONG, A. ; NESVIZHSKII, A. I. . Updates on Philosopher: a complete toolkit for both conventional and open search-based shotgun proteomics data analysis. In: 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019, Atlanta. 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019.

• GEISZLER, D. ; KONG, A. ; AVTONOMOV, D. M. ; LEPREVOST, F. D. V. ; CHANG, H. ; NESVIZHSKII, A. I. . Exploring the Open Proteome: Proteomics Open Search Analysis with PTM-Shepherd. In: 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019, Atlanta. 67th ASMS Conference on Mass Spectrometry & Allied Topics, 2019.

• TEO, G. C. ; MELLACHERUVU, D. ; LEPREVOST, F. D. V. ; BASRUR, VENKATESHA ; NESVIZHSKII, A. I. . LibMatic: DIA-Umpire Based Pipeline for Generation of Spectral Libraries for Targeted Analysis of DIA Data. In: 66th Conference on Mass Spectrometry and Allied Topics, 2018, San Diego. 66th Conference on Mass Spectrometry and Allied Topics, 2018.

• CHANG, H. ; KONG, A. ; LEPREVOST, F. D. V. ; AVTONOMOV, D. M. ; NESVIZHSKII, A. I. . Crystal-C: A Computational Tool for Refinement of Open Search Results. In: 66th Conference on Mass Spectrometry and Allied Topics, 2018, San Diego. 66th Conference on Mass Spectrometry and Allied Topics, 2018.

• KONG, A. ; GEISZLER, D. ; AVTONOMOV, D. M. ; LEPREVOST, F. D. V. ; CHANG, H. ; NESVIZHSKII, A. I. . Characterizing and Comparing Modification Profiles in Large-Scale Shotgun Proteomics Using PTM-Shepherd. In: 66th Conference on Mass Spectrometry and Allied Topics, 2018, San Diego. 66th Conference on Mass Spectrometry and Allied Topics, 2018.

• LEPREVOST, F. D. V. ; SHANMUGAM, A. K. ; MELLACHERUVU, D. ; CHANG, H. ; AVTONOMOV, DMITRY M ; KONG, A. ; NESVIZHSKII, A. I. . Philosopher: A Complete Pipeline for Both Conventional and Open Search-Based Shotgun Proteomics Data Analysis. In: 66th Conference on Mass Spectrometry and Allied Topics, 2018, San Diego. 66th Conference on Mass Spectrometry and Allied Topics, 2018.

• AVTONOMOV, D. M. ; KONG, ANDY T ; LEPREVOST, F. D. V. ; CHANG, H. ; NESVIZHSKII, A. I. . MSFragger-Based Computational Framework for Conventional MS/MS Database Searching And Open Search-Based PTM Characterization. In: 66th Conference on Mass Spectrometry and Allied Topics, 2018, San Diego. 66th Conference on Mass Spectrometry and Allied Topics, 2018.

• KONG, A. ; LEPREVOST, F. D. V. ; AVTONOMOV, D. M. ; MELLACHERUVU, D. ; NESVIZHSKII, A. I. . False Discovery Rates are Underestimated by the Target-decoy Strategy due to Unaccounted for Chemical and Biological Modifications. In: ASMS Conference on Mass Spectrometry and Allied Topics, 2017, Indiana. ASMS Journal, 2017.

• TEO, G. C. ; MELLACHERUVU, D. ; BLUDAU, I. ; URS, S. ; CONLON, K. ; LEPREVOST, F. D. V. ; AEBERSOLD, R. ; BASRUR, V. ; SIMEONE, D. M. ; NESVIZHSKII, A. I. . LibMatic: A DIA-Umpire Based Pipeline to Generate Spectral Libraries for Targeted re-Extraction in DIA. In: 67th ASMS Conference on Mass Spectrometry and Allied Topics, 2017, Indianapolis. 67th ASMS Conference on Mass Spectrometry and Allied Topics, 2017.

• LEPREVOST, F. D. V. ; SHANMUGAM, A. K. ; NESVIZHSKII, A. I. . Philosopher: A Data Processing Toolkit for Shotgun Proteomics. In: 67th ASMS Conference on Mass Spectrometry and Allied Topics, 2017, Indianapolis. 67th ASMS Conference on Mass Spectrometry and Allied Topics, 2017.

• MELLACHERUVU, D. ; WRIGH, Z. ; LEPREVOST, F. D. V. ; GINGRAS, A. ; NESVIZHSKII, A. I. . REPRINT: A Resource for Evaluation of Protein Interaction Networks. In: 67th ASMS Conference on Mass Spectrometry and Allied Topics, 2017, Indianapolis. 67th ASMS Conference on Mass Spectrometry and Allied Topics, 2017.

• LEPREVOST, F. V. ; AFLITOS, S. A. ; GRUNING, B. ; ROEST, H. ; BARSNES, H. ; JIMENEZ, R. ; HERMJAKOB, H. ; NESVIZHSKII, A. I. ; PEREZ-RIVEROL, Y. . BioDocker: An open source and community-driven framework for software standardization in proteomics. In: 64th ASMS, 2016, San Antonio. Annual Conference Program, 2016.

• KONG, A. ; LEPREVOST, F. V. ; NESVIZHSKII, A. I. . Fast and comprehensive peptide identifications through index-based database search. In: 64th ASMS, 2016, San Antonio. Annual Conference Program, 2016.

• LIMA, D. B. ; PEREZ-RIVEROL, Y. ; LEPREVOST, F. V. ; NOGUEIRA, F. C. S. ; BARBOSA, V. C. ; DOMONT, G. B. ; FRANCA, F. M. G. ; CARVALHO, P. C. . Effectively Addressing Massively Complex Proteomic Search Spaces. In: First Meeting of the Brazilian Proteomics Society, 2012, Rio de Janeiro. First Meeting of the Brazilian Proteomics Society, 2012.

• LEPREVOST, F. V. ; LIMA, D. B. ; CARVALHO, P. C. . PepExplorer: A Computational Pipeline for Analyzing Proteomes of Non-Canonical Organisms. In: First Meeting of the Brazilian Proteomics Society, 2012, Rio de Janeiro. First Meeting of the Brazilian Proteomics Society, 2012.

• LEPREVOST, F. V. ; RAMPAZZO, R.C.P. ; MARCHINI, F. ; Pavoni, D.P. ; KRIEGER, M. A. ; PROBST, C. M. . Systemic Analysis of Gene Expression Modulation After Nutritional Stress in Trypanosoma cruzi. In: XXVII Annual Meeting of the Brazilian Society of Protozoology / XXXVIII Annual Meeting on Basic Research in Chagas' Disease, 2011, Foz do Iguaçú. XXVII Annual Meeting of the Brazilian Society of Protozoology / XXXVIII Annual Meeting on Basic Research in Chagas' Disease, 2011.

• VIDAL, N. ; PRETI, H. ; AFORNALI, A. ; FRANCISCO, E.L. ; LEPREVOST, F. V. ; BATISTA, M. ; Pavoni, D.P. ; MARCHINI, F. ; PROBST, C. M. ; KRIEGER, M. A. . Trypanosoma cruzi ORFeome Project v.1.0. In: XXVII Annual Meeting of the Brazilian Society of Protozoology / XXXVIII Annual Meeting on Basic Research in Chagas' Disease, 2011, Foz do Iguaçu. XXVII Annual Meeting of the Brazilian Society of Protozoology / XXXVIII Annual Meeting on Basic Research in Chagas' Disease, 2011.

• YAMAMOTO, F. ; LEPREVOST, F. V. ; PRETI, H. ; UMAKI, A.C.S. ; RAMPAZZO, R.C.P. ; PROBST, C. M. ; Pavoni, D.P. ; Krieger, M. . Characterization of genes differentially expressed during Trypanosoma cruzi metacyclogenesis. In: XXIV Annual Meeting of the Brazilian Society of Protozoology / XXXV Annual Meeting on Basic Research in Chagas Disease, 2008, Águas de Lindóia. XXIII Annual Meeting of the Brazilian Society of Protozoology / XXXIV Annual Meeting on Basic Research in Chagas Disease, 2008.

• LEPREVOST, F. V. ; YAMAMOTO, F. ; PRETI, H. ; UMAKI, A.C.S. ; RAMPAZZO, R.C.P. ; DALLABONA,A.C. ; MARCHINI, F. ; PROBST, C. M. ; Krieger, M. ; Pavoni, D.P. . Characterization of Genes of Unknown Function With a Higher Expression in Trypanosoma cruzi Metacyclic Trypomastigotes. In: XXXV Annual Meeting on Basic Research in Chagas Disease / XXIV Annual Meeting of the Brazilian Society of Protozoology, 2008, Águas de Lindóia. XXXV Annual Meeting on Basic Research in Chagas Disease / XXIV Annual Meeting of the Brazilian Society of Protozoology, 2008.

• PRETI, H. ; Pavoni, D.P. ; LEPREVOST, F. V. ; YAMAMOTO, F. ; MARCHINI, F. ; ROCHA, J. ; BATISTA, M. ; PROBST, C. M. ; GOLDENBERG, S. ; Krieger, M. . Functional Characterization of Differential Expressed Protein During T.cruzi Metacyclogenesis. In: XXIII Annual Meeting of the Brazilian Society of Protozoology / XXXIV Annual Meeting on Basic Research in Chagas Disease, 2007, Caxambu. Proceedings of the XXIII Annual Meeting of the Brazilian Society of Protozoology, 2007.

• PROBST, C. M. ; MARKINI, F.K. ; Pavoni, D.P. ; PRETI, H. ; BIONDO, C. A. ; LEPREVOST, F. V. ; BAER, F. ; BATISTA, M. ; YAMAMOTO, F. ; GOLDENBERG, S. ; Krieger, M. . A Trypanosoma cruzi differentially expressed gene clone collection (T.cruzi DEG - ORFeome). In: XXII Annual Meeting of the Brazilian Society of Protozoology / XXXIII Annual Meeting on Basic Research in Chagas Disease, 2006, Caxambú. XXII Meeting of the SBPZ, 2006.

• LEPREVOST, F. V. ; CANOVA, T. ; SOARES, L. ; BIONDO, C. A. ; GIRALDI, R. ; ATALLA, M. ; SCHLEDER, B. ; DOLABELLA, M. ; GUIMARAES, A. T. B. . Diagnóstico de Enteroparasitoses e Levantamento dos Principais Fatores de Risco em Crianças de uma Comunidade em Curitiba - PR. In: XIX Congresso Brasileiro de Parasitologia, 2005, Porto Alegre. Sociedade Brasileira de Parasitologia, 2005.

• LEPREVOST, F. V. ; CANOVA, T. ; BIONDO, C. A. ; ATALLA, M. ; GIRALDI, R. ; GUIMARAES, A. T. B. . Pesquisa de Parasitoses Intestinais em Crianças de Ambos os Sexos e Diferentes Faixas Etárias no Bairro do Tatuquara, Curitiba - PR. In: 1° Encontro de Pesquisa em Biologia & Saúde, 2005, Curitiba. 1° Encontro de Pesquisa em Biologia & Saúde, 2005.

• LEPREVOST, F. V. . Perl na Bioinformática. 2013. (Apresentação de Trabalho/Comunicação).

• LEPREVOST, F. V. . Iniciativa BioCoders. 2013. (Apresentação de Trabalho/Conferência ou palestra).

• LEPREVOST, F. V. . Big Bio Data. 2012. (Apresentação de Trabalho/Conferência ou palestra).

• LEPREVOST, F. V. ; CARVALHO, P. C. . PepExplorer: Organizing and Filtering of de novo Results. 2012. (Apresentação de Trabalho/Congresso).

• LEPREVOST, F. V. ; YAMAMOTO, F. ; SOARES, M.J. ; RAMPAZZO, R.C.P. ; PROBST, C. M. ; KRIEGER, M. A. ; Pavoni, D.P. . Characterization of a TPPP/p25 Protein in Trypanosoma cruzi. 2010. (Apresentação de Trabalho/Congresso).

• LEPREVOST, F. V. ; YAMAMOTO, F. ; PRETI, H. ; UMAKI, A.C.S. ; RAMPAZZO, R.C.P. ; DALLABONA,A.C. ; MARCHINI, F. ; PROBST, C. M. ; Krieger, M. ; Pavoni, D.P. . Characterization of genes of unknown function with a higher expression in Trypanosoma cruzi metacyclic trypomastigotes. 2008. (Apresentação de Trabalho/Congresso).

• LEPREVOST, F. V. ; Poersch C ; Pavoni, D.P. ; Krieger, M. . Produção de Anticorpos Recombinantes contra Proteínas de Trypanosoma cruzi por Phage Display. 2006. (Apresentação de Trabalho/Seminário).

• CANOVA, T. ; BIONDO, C. A. ; LEPREVOST, F. V. ; ATALLA, M. ; GIRALDI, R. ; GUIMARAES, A. T. B. . Pesquisa de Parasitoses Intestinais em Crianças de Ambos Sexos e Diferentes Faixas Etárias No Bairro Tatuquara, Curitiba - PR. 2005. (Apresentação de Trabalho/Congresso).

• LEPREVOST, F. V. . Aplicando uma Rede Neural Hopfield 2013 (Artigo).

• LEPREVOST, F. V. . Perl Maven, 2013. (Tradução/Outra).

• LEPREVOST, F. V. . Introdução ao BioPerl 2012 (Artigo).

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