Marc Andre Michael Thorsten Sammeth

Hi, I am a researcher in computational biology and my story starts at the Federal University of Würzburg (2002), where graduated in biology (major: biochemistry, genetics & neurobiology, virology & immunology, minor: computer science). My PhD studies were supported by the Ernst Schering Research Foundation, and I studied specialized algorithms for multiple sequence alignments at Bielefeld University and at the Free University of Amsterdam. The German Academic Exchange service funded my post-doctoral studies at the University Pompeu Fabra, where I started to work on genomics and (alternative) splicing. I followed these research lines at the newly created Center for Genomic Regulation in Barcelona, supported by a young reseacher grant by the Spanish Ministry of Education and Science. Afterwards, I started my first group in Functional Bioinformatics at the Spanish National Sequencing Center, focusing on all aspects of functional elements as assessed by novel sequencing technologies. Since 2013 I located to Brazil, where I researched at the National Center for Computational Science before joining the Biophysics Institute Carlos Chagas Filho at the Federal University of Rio de Janeiro. The research in my lab focuses on functional genomics and transcriptomics in general. Cheers

Informações coletadas do Lattes em 07/07/2023

Acadêmico

Formação acadêmica

Doutorado em Dr. rer. nat.

2003 - 2005

Universidade Federal de Bielefeld
Título: Integrated Multiple Alignment
Orientador: Jens Stoye
Coorientador: Dag Harmsen. Bolsista do(a): Ernst-Schering Stiftung, SCHERINGSTIFTUNG, Alemanha. Grande área: Ciências Exatas e da TerraGrande Área: Ciências Biológicas / Área: Genética.

Graduação em Bioquimica

1996 - 2002

Universidade Federal de Würzburg

Pós-doutorado

2005 - 2008

Pós-Doutorado. , Centre de Regulació Genòmica, CRG, Espanha. , Bolsista do(a): Deutscher Akademischer Austausch Dienst, DAAD, Alemanha. , Grande área: Ciências Biológicas, Grande Área: Ciências Biológicas / Área: Biologia Geral. , Grande Área: Ciências Exatas e da Terra / Área: Ciência da Computação.

Idiomas

Inglês

Compreende Bem, Fala Bem, Lê Bem, Escreve Bem.

Espanhol

Compreende Bem, Fala Bem, Lê Bem, Escreve Razoavelmente.

Português

Compreende Bem, Fala Bem, Lê Bem, Escreve Razoavelmente.

Francês

Compreende Razoavelmente, Fala Razoavelmente, Lê Pouco, Escreve Pouco.

Alemão

Compreende Bem, Fala Bem, Lê Bem, Escreve Bem.

Catalão

Compreende Bem, Fala Bem, Lê Razoavelmente, Escreve Razoavelmente.

Áreas de atuação

Grande área: Ciências Biológicas / Área: Biofísica / Subárea: Biofísica Molecular.

Grande área: Ciências Biológicas / Área: Bioquímica / Subárea: Biologia Molecular.

Grande área: Ciências Biológicas / Área: Biologia Geral / Subárea: Bioinformatics.

Grande área: Ciências Biológicas / Área: Genética / Subárea: Genética Humana e Médica.

Grande área: Ciências Biológicas / Área: Genética / Subárea: Alternative Splicing.

Grande área: Ciências Biológicas / Área: Genética / Subárea: RNA-Seq.

Organização de eventos

LAGERGREN, J. MCLYSAGHT, A. SANKOFF, D. CHAUVE, C. EL-MABROUK, N. DIALLO, A. B. BILEL, B. BARREIRO, L. BURGER, G. HAMEL, S. LAFOND, M. LANG, F. MILOSZ, R. NOUTAHI, E. ALEKSEYEV, M. ARVESTAD, L. BERGERON, A. BRAGA, M. D. V. CHINDELEVITCH, L. CSUROS, M. EBERSBERGER, I. FERTIN, G. JAHN, K. SAMMETH, MICHAEL JAVED, A. , et al. MALDE, K. MIKLOS, I. MORET, B. OUANGRAOUA, A. PRZYTYCKA, T. SAGOT, M. SWENSON, K. TANNIER, E. TESLER, G. TULLER, T. WANG, L. WARNOW, T. YANCOPOULOS, S. ZHANG, L. ZHENG, C. ZHENG, J. ; Recomb-CG (Comparative Genomics). 2016. (Congresso).

AGURO, F. ; VALENCIA, A. ; HANSON, B. ; GAETA, B. ; ROST, B. ; KOVATS, D. ; MELO, F. ; OLIVEIRA, G. ; RIVAS, J. L. ; SAMMETH, MICHAEL . ISCB Latin America (International Society for Computational Biology). 2016. (Congresso).

SAMMETH, MICHAEL . Recomb CG. 2016. (Congresso).

SAMMETH, MICHAEL . ISCB Latin America. 2016. (Congresso).

ALEKSEYEV, M. ARVESTAD, L. BERGERON, A. BRAGA, M. D. V. CHAUVE, C. EBERSBERGER, I. EL-MABROUK, N. FERTIN, G. JAHN, K. JAVED, A. LAGERGREN, J. LIPTAK, Z. MAKINEN, V. MALDE, K. MCLYSAGHT, A. MEIDANIS, J. MORET, B. MIKLOS, I. OUANGRAOUA, A. PRZYTYCKA, T. SAGOT, M. SAMMETH, MICHAEL SETUBAL, J. STOYE, J. SWENSON, K. , et al. TANNIER, E. TESLER, G. TULLER, T. WANG, L. WARNOW, T. YANCOPOULOS, S. ZHANG, L. ZHENG, C. ZHENG, J. ; Recomb-CG (Comparative Genomics). 2015. (Congresso).

SAMMETH, MICHAEL . Recomb-CG. 2015. (Congresso).

DEVIGNES, M. MOREAU, Y. ALBRECHT, M. AZUAJE, F. COULET, A. DAUCHEZ, M. SCHBATH, S. LENGAUER, T. LENHOF, H. MICHOT, M. MORIN, E. MOULINIER, L. POCH, O. RITCHIE, D. SAGOT, M. SMAIL-TABBONE, M. THOMPSON, J. ABOUELHODA, M. DURET, L. KOLODNY, R. SALAMIN, N. ALIOTO, T. DUTHEIL, J. KOSAKOVSKY-POND, S. SAMMETH, MICHAEL , et al. ALTMANN, A. EBELING, M. KOZAKOV, D. SAMWALD, M. ANDERS, S. EDERER, M. KRAUSE, R. SANSONE, S. ARAKAWA, K. EDWARDS, R. KRIJGSMAN, O. SARKANS, U. ARES, S. ELOFSSON, A. KRYSTHAFOVYCH, A. SBALZARINI, I. BACKOFEN, R. FALQUET, L. KUHN, T. SCHABER, J. BALLESTER, P. FIGGE, T. LEGENDRE, M. SCHAFFER, A. BARBERIS, M. FLEMING, R. LEHNHOF, H. SCHLESSINGER, A. BARTON, G. FODEH, S. LEITNER, F. SCHLICKER, A. BATAILLON, T. FRATERNALI, F. LESER, U. SCHLIEP, A. BEER, M. A. FRIEDEL, C. C. LI, M. SCHOEBERL, B. BEISSBARTH, T. FRISHMAN, D. LIN, Y. SCHROEDER, M. BEN-HUR, A. GAGNEUR, J. LINIAL, M. SCHULZ, J. BEN-TAL, N. GASPIN, C. LOPEZ, R. SCHULZ, M. BENOS, P. T. GEDEON, T. LORD, P. SCHWARTZ, R. BERGER, B. GEVAERT, O. MA, S. SCORNAVACCA, C. LLAVORI, R. B. GIBRAT, J. MARSDEN, B. SELBIG, J. BERNECHE, S. GIEGERICH, R. MARTENS, L. SHAH, N. BIROL, I. GIORGETTI, A. MARTI-RENOM, M. A. SHOMRON, N. BLAKE, J. GKOUTOS, G. MCGUFFIN, L. SMITH, B. BLANCHETTE, M. GONNELLA, G. MCLYSAGHT, A. SOEDING, J. BOECKMANN, B. GREGER, L. MENSHYKAU, D. SPANG, R. BONIZZONI, P. GRUNING, A. MICHAILIDIS, G. STAHLBERG, H. BORGWARDT, K. GUEROIS, R. MONTGOMERY, S. STAMATAKIS, A. BROCHIER-ARMANET, C. HAAS, J. MORGENSTERN, B. STATNIKOV, A. BROMBERG, Y. HASTINGS, J. MOSTAFAVI, S. STEGLE, O. BROWN, A. HEERMANN, D. MUFFATO, M. STELLING, J. BUCETA, J. HELMER-CITTERICH, M. NAGY, M. STOYE, J. BUIL, A. HERICHE, J. NEBEL, M. SUNG, W. BUJNICKI, J. HERMJAKOB, H. NEDELLEC, C. TASKESEN, E. BULLINGER, E. HERRMANN, C. NENADIC, G. THIEFFRY, D. BUSCH, H. HIGGINS, D. NIKOLOSKI, Z. THOMAS, P. BUSSEMAKER, H. HILLER, S. NING, Z. TIELEMAN, P. CAMACHO, C. HOBOLTH, A. PAPP, B. TIMMER, J. CAMPROUX, A. HOEHNDORF, R. PARK, J. C. TIURYN, J. CANISIUS, S. HOFACKER, I. PARKINSON, H. TOWNSEND, J. CARBONE, A. HOFFMANN, D. PARTS, L. TRESCH, A. CASTELO, R. HOFFMANN, S. PERES, S. TSAI, J. CHEN, R. HOLM, L. PETERSEN, K. TUFFERY, P. CHIAPELLO, H. HOOFT, R. PHILIPPE, H. VALENCIA, A. COIN, L. HUBBARD, S. PONTY, Y. VALLOTTON, P. COLLIER, N. HUBER, W. PORNPUTTAPONG, N. HAM, R. V. COLLIN, O. HUPE, P. PREISSNER, R. HELDEN, J. V. COUTO, F. IBBERSON, M. PRILUSKY, J. VANDIJK, D. COZZETTO, D. IBER, D. PUJANA, M. A. VENCLOVAS, Č CRAWFORD, F. IORIO, F. PUPKO, T. VERT, J. CROSET, S. ISELI, C. RAHMANN, S. VIALETTE, S. CSABA, G. JAEGER, S. RAJASEKARAN, S. VINGRON, M. CSIKASZ-NAGY, A. JENSEN, J. RATSCH, G. VITEK, O. DALCHE-BUC, F. YEPES, A. J. RATTRAY, M. HAESELER, A. V. DAGAN, T. JONASSEN, I. REINERT, K. WALDISPUHL, J. DANCHIN, A. JUNG, K. RENARD, B. WANG, X. DATTA, S. KAFKAS, S. RENQIANGMIN, M. WELCH, J. DAUBIN, V. KALININA, O. RIBECA, P. WHELAN, S. DAUCHEL, H. KANE, M. RINALDI, F. WODAK, S. CRUZ, X. L. KATOH, K. RITCHIE, D. WOLF, V. RIDDER, D. KELLEY, L. ROBINSON, M. WOLFSON, H. J. RIDDER, J. KEMMEREN, P. ROBINSON, P. XENARIOS, I. DEANE, C. KERSEY, P. ROBINSON-RECHAVI, M. ZASLAVSKY, E. DENISE, A. KIM, J. ROCKE, D. ZERBINO, D. DESSIMOZ, C. KIM, J. ROMBAUTS, S. ZHANG, L. DEUTSCH, E. W. KIM, P. ROUGEMONT, J. ZHANG, X. BERNARDO, D. KIRCHER, M. ROZAS, J. ZINOVYEV, A. DONCIC, A. KLAU, G. W. RUCZINSKI, I. ZUYDERDUYN, S. DRABLOS, F. KNIBBE, C. RUDIGER, S. DROBNJAK, I. KOLDE, R. RZHETSKY, A. ; European Conference of Computational Biology (ECCB). 2014. (Congresso).

Participação em eventos

FAPESP/EU-LIFE Symposium on Cancer Genomics, Inflammation & Immunity. 2016. (Simpósio).

International Plant & Animal Genome XXV. Annotating the Impact of Alternative Splicing on Protein Domains in Plants. 2016. (Congresso).

International Plant & Animal Genome XXV. Automated functional annotation of protein products in alternatively spliced genes. 2016. (Congresso).

Seminar at IBqM-UFRJ.The Splicing Anatomy across Human Cell Types, Tissues and Individuals. 2016. (Seminário).

23rd Congress of the International Union of Biochemistry and Molecular Biology (IUBMB). The Phenotypic Landscape across Human Individuals and Tissues: Lessons from the Genotype-Tissue Expression (GTEX) Pilot Project. 2015. (Congresso).

44th Annual Meeting of the Brazilian Society for Biochemistry and Molecular Biology ? SBBq. The Phenotypic Landscape across Human Individuals and Tissues: Lessons from the Genotype-Tissue Expression (GTEX) Pilot Project. 2015. (Congresso).

X-meeting + Brazilian Symposium on Bioinformatics (BSB). The ASTA-FUNK tool: Alternative Splicing Trancriptional Analyses analyzing FUNctional Knowledge. 2015. (Congresso).

X-meeting + Brazilian Symposium on Bioinformatics (BSB). Gene correlation networks with Dual-seq data. 2015. (Congresso).

60th Annual SBG Meeting. Participant. 2014. (Congresso).

SB-meeting.Europe-Brazil Meeting on Systems and Synthetic Biology. 2014. (Encontro).

Seminar BQ / USP.Seminário da bioquimica / USP. 2014. (Seminário).

Seminar IB/USP.Seminário do IB / USP. 2014. (Seminário).

UFRJ Biophysics.Seminário do IBCCF/UFRJ. 2014. (Seminário).

Seminar CBiot / UFRGS.Seminário do CBiot / UFRGS. 2013. (Seminário).

Seminar ICB / UFMG.Seminário do ICB / UFMG. 2013. (Seminário).

UFRJ Advanced School in functional genomics.Escola de Altos Estudos em Genômica Funcional. 2013. (Simpósio).

Participação em bancas

Aluno: Thayane Bottaro de Brito Boldrini

SAMMETH, MICHAEL; HEISE, N.; MARVAL, M. G.; LEITAO, A. A. C.. Transcriptômica do Trypanosoma cruzi em resposta ao estresse térmico. 2016. Dissertação (Mestrado em Ciências Biológicas (Biofísica)) - Universidade Federal do Rio de Janeiro.

Aluno: Ayslan Castro Brant

SAMMETH, MICHAEL. Análise da integração genômica do Papilomavírus Humano e a expressão de seus genes em câncer cervical. 2015. Dissertação (Mestrado em ONCOLOGIA) - Instituto Nacional de Câncer.

Aluno: Paulo Thiago de Souza Santos

MOREIRA, M. A. M.; ABDELHAY, E. S. F. W.; SCHRAGO, C. E. G.;SAMMETH, MICHAEL; BONAMINO, M. H.; MORAES, M. O.. Estudo de Alterações Moleculares em Carcinoma Epidermóide de Esôfago através de Sequenciamento de RNA (RNA-Seq). 2016. Tese (Doutorado em ONCOLOGIA) - Instituto Nacional de Câncer.

Aluno: Guilherme Loss de Morais

MORAIS, G. L.;Sammeth, Michael. Caracterização filogenética das proteínas inativadoras de ribossomos (RIPs) de mamona (Ricinus communis L.) e análise da expressão dos genes Rcom RIPs durante o desenvolvimento da semente. 2013. Tese (Doutorado em Biologia Celular e Molecular) - Universidade Federal do Rio Grande do Sul.

Aluno: Mainá Bitar Lourenço

WEBER, G; FELICORI, L. F.;SAMMETH, M.. Aplicação da bioinformática no estudo de sequências e estruturas biológicas de agentes etiológicos de doenças tropicais. 2013 - Universidade Federal de Minas Gerais.

Aluno: Leandro Santos

SAMMETH, MICHAEL; URMENYI, T. P.; OLIVEIRA, F. M. B.; SANTOS, E. O.. a) Tipos de RNA e características estruturais; b) Análise de expressão em grande escala (ênfase em RNA-seq);. 2016. Exame de qualificação (Mestrando em Ciências Biológicas (Biofísica)) - Universidade Federal do Rio de Janeiro.

Aluno: Daniel Moreira da Costa Leite

SANTOS, E. O.;SAMMETH, M.; OLIVEIRA, F. M. B.. Caracterização do Fator Transcricional PhoB: Relaçoes estruturais e funcionais com o genoma de Vibrio cholerae. 2016 - Universidade Federal do Rio de Janeiro, Instituto de Biofísica Carlos Chaga.

SAMMETH, M.. Pesquisador. 2015. Instituto Nacional de Câncer.

Orientou

Vitor Lima Coelho

QuantION; Início: 2015; Tese (Doutorado em Ciências Biológicas (Biofísica)) - Universidade Federal do Rio de Janeiro, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; (Orientador);

Caio Padoan de Sá Godinho

Dual-Seq; Início: 2015; Tese (Doutorado em Ciências Biológicas (Biofísica)) - Universidade Federal do Rio de Janeiro, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; (Orientador);

Ayslan Castro Brant

Splicing e transcriptomica em HPV; Início: 2015; Tese (Doutorado em Genetica) - Universidade Federal do Rio de Janeiro; (Coorientador);

Martin Okechukwu Oti

Início: 2016; Universidade Federal do Rio de Janeiro;

Anna Carolina Silva Garcia

Transcriptomica em Patogenos e Vetores; Início: 2016 - Universidade Federal do Rio de Janeiro; (Orientador);

Bruna Aparecida Bernardes da Silva

Splicing em neuronios; Início: 2016 - Universidade Federal do Rio de Janeiro; (Orientador);

JULIA DA SILVA SANTOS

Navegador de Genomas; Início: 2016 - Universidade Federal do Rio de Janeiro; (Orientador);

Monyque Evans Souza Lima

Navegador de Genomas; Início: 2016 - Universidade Federal do Rio de Janeiro; (Orientador);

Vitor Lima Coelho

Functional Analysis of Alternative Splicing Events; 2015; Dissertação (Mestrado em Modelagem Computacional) - Laboratório Nacional de Computação Científica, Conselho Nacional de Desenvolvimento Científico e Tecnológico; Orientador: Marc Andre Michael Thorsten Sammeth;

Marcio Lassance Martins de Oliveira

Epigenetic Profile Analysis; 2015; Tese (Doutorado em Pós graduação em Biofisica (Ciencias Biologicas)) - Universidade Federal do Rio de Janeiro, Instituto de Biofísica Carlos Chaga, Conselho Nacional de Desenvolvimento Científico e Tecnológico; Orientador: Marc Andre Michael Thorsten Sammeth;

Katrin Rademacher

Evidence of skipped exons interacting with neighboring alternative splice sites; 2009; Tese (Doutorado em Genome Informatics) - Bielefeld University,; Orientador: Marc Andre Michael Thorsten Sammeth;

Produções bibliográficas

2018 FERREIRA, PEDRO G. ; MUÑOZ-AGUIRRE, MANUEL ; REVERTER, FERRAN ; SÁ GODINHO, CAIO P. ; SOUSA, ABEL ; AMADOZ, ALICIA ; SODAEI, REZA ; HIDALGO, MARTA R. ; PERVOUCHINE, DMITRI ; CARBONELL-CABALLERO, JOSE ; NURTDINOV, RAMIL ; BRESCHI, ALESSANDRA ; AMADOR, RAZIEL ; OLIVEIRA, PATRÍCIA ; ÇUBUK, CANKUT ; CURADO, JOÃO ; AGUET, FRANÇOIS ; OLIVEIRA, CARLA ; DOPAZO, JOAQUIN ; Sammeth, Michael ; ARDLIE, KRISTIN G. ; GUIGÓ, RODERIC . The effects of death and post-mortem cold ischemia on human tissue transcriptomes. Nature Communications , v. 9, p. 490, 2018.
2018 BORONI, MARIANA ; Sammeth, Michael ; GAVA, SANDRA GROSSI ; JORGE, NATASHA ANDRESSA NOGUEIRA ; MACEDO, ANDRÉA MARA ; MACHADO, CARLOS RENATO ; MOURÃO, MARINA MORAES ; FRANCO, GLÓRIA REGINA . Landscape of the spliced leader trans-splicing mechanism in Schistosoma mansoni. Scientific Reports , v. 8, p. 3877, 2018.
2018 COELHO, VITOR ; Sammeth, Michael . An automated method for detecting alternatively spliced protein domains. Bioinformatics , v. 1, p. 1, 2018.
2018 BRITO, TARCISIO ; JULIO, ALISON ; BERNI, MATEUS ; DE CASTRO PONCIO, LISIANE ; BERNARDES, EMERSON SOARES ; ARAUJO, HELENA ; Sammeth, Michael ; PANE, ATTILIO . Transcriptomic and functional analyses of the piRNA pathway in the Chagas disease vector Rhodnius prolixus. PLoS Neglected Tropical Diseases , v. 12, p. e0006760, 2018.
2018 BRANT, AYSLAN C. ; MENEZES, ALBERT N. ; FELIX, SHAYANY P. ; DE ALMEIDA, LIZ M. ; Sammeth, Michael ; MOREIRA, MIGUEL A.M. . Characterization of HPV integration, viral gene expression and E6E7 alternative transcripts by RNA-Seq: A descriptive study in invasive cervical cancer. GENOMICS , v. S0888, p. 30658, 2018.
2017 AGUET, FRANÇOIS ARDLIE, KRISTIN G. CUMMINGS, BERYL B. GELFAND, ELLEN T. GETZ, GAD HADLEY, KANE HANDSAKER, ROBERT E. HUANG, KATHERINE H. KASHIN, SEVA KARCZEWSKI, KONRAD J. LEK, MONKOL LI, XIAO MACARTHUR, DANIEL G. NEDZEL, JARED L. NGUYEN, DUYEN T. NOBLE, MICHAEL S. SEGRÈ, AYELLET V. TROWBRIDGE, CASANDRA A. TUKIAINEN, TARU ABELL, NATHAN S. BALLIU, BRUNILDA BARSHIR, RUTH BASHA, OMER BATTLE, ALEXIS BOGU, GIREESH K. , et al. BROWN, ANDREW BROWN, CHRISTOPHER D. CASTEL, STEPHANE E. CHEN, LIN S. CHIANG, COLBY CONRAD, DONALD F. COX, NANCY J. DAMANI, FARHAN N. DAVIS, JOE R. DELANEAU, OLIVIER DERMITZAKIS, EMMANOUIL T. ENGELHARDT, BARBARA E. ESKIN, ELEAZAR FERREIRA, PEDRO G. FRÉSARD, LAURE GAMAZON, ERIC R. GARRIDO-MARTÍN, DIEGO GEWIRTZ, ARIEL D.H. GLINER, GENNA GLOUDEMANS, MICHAEL J. GUIGO, RODERIC HALL, IRA M. HAN, BUHM HE, YUAN HORMOZDIARI, FARHAD HOWALD, CEDRIC KYUNG IM, HAE JO, BRIAN YONG KANG, EUN KIM, YUNGIL KIM-HELLMUTH, SARAH LAPPALAINEN, TUULI LI, GEN LI, XIN LIU, BOXIANG MANGUL, SERGHEI MCCARTHY, MARK I. MCDOWELL, IAN C. MOHAMMADI, PEJMAN MONLONG, JEAN MONTGOMERY, STEPHEN B. MUÑOZ-AGUIRRE, MANUEL NDUNGU, ANNE W. NICOLAE, DAN L. NOBEL, ANDREW B. OLIVA, MERITXELL ONGEN, HALIT PALOWITCH, JOHN J. PANOUSIS, NIKOLAOS PAPASAIKAS, PANAGIOTIS PARK, YOSON PARSANA, PRINCY PAYNE, ANTHONY J. PETERSON, CHRISTINE B. QUAN, JIE REVERTER, FERRAN SABATTI, CHIARA SAHA, ASHIS Sammeth, Michael SCOTT, ALEXANDRA J. SHABALIN, ANDREY A. SODAEI, REZA STEPHENS, MATTHEW STRANGER, BARBARA E. STROBER, BENJAMIN J. SUL, JAE HOON TSANG, EMILY K. URBUT, SARAH VAN DE BUNT, MARTIJN WANG, GAO WEN, XIAOQUAN WRIGHT, FRED A. XI, HUALIN S. YEGER-LOTEM, ESTI ZAPPALA, ZACHARY ZAUGG, JUDITH B. ZHOU, YI-HUI AKEY, JOSHUA M. BATES, DANIEL CHAN, JOANNE CHEN, LIN S. CLAUSSNITZER, MELINA DEMANELIS, KATHRYN DIEGEL, MORGAN DOHERTY, JENNIFER A. FEINBERG, ANDREW P. FERNANDO, MARIAN S. HALOW, JESSICA HANSEN, KASPER D. HAUGEN, ERIC HICKEY, PETER F. HOU, LEI JASMINE, FARZANA JIAN, RUIQI JIANG, LIHUA JOHNSON, AUDRA KAUL, RAJINDER KELLIS, MANOLIS KIBRIYA, MUHAMMAD G. LEE, KRISTEN BILLY LI, JIN LI, QIN LI, XIAO LIN, JESSICA LIN, SHIN LINDER, SANDRA LINKE, CAROLINE LIU, YAPING MAURANO, MATTHEW T. MOLINIE, BENOIT MONTGOMERY, STEPHEN B. NELSON, JEMMA NERI, FIDENCIO J. OLIVA, MERITXELL PARK, YONGJIN PIERCE, BRANDON L. RINALDI, NICOLA J. RIZZARDI, LINDSAY F. SANDSTROM, RICHARD SKOL, ANDREW SMITH, KEVIN S. SNYDER, MICHAEL P. STAMATOYANNOPOULOS, JOHN STRANGER, BARBARA E. TANG, HUA TSANG, EMILY K. WANG, LI WANG, MENG VAN WITTENBERGHE, NICHOLAS WU, FAN ZHANG, RUI NIERRAS, CONCEPCION R. BRANTON, PHILIP A. CARITHERS, LATARSHA J. Guan, Ping MOORE, HELEN M. RAO, ABHI VAUGHT, JIMMIE B. GOULD, SARAH E. LOCKART, NICOLE C. MARTIN, CASEY STRUEWING, JEFFERY P. VOLPI, SIMONA ADDINGTON, ANJENE M. KOESTER, SUSAN E. LITTLE, A. ROGER BRIGHAM, LORI E. HASZ, RICHARD HUNTER, MARCUS JOHNS, CHRISTOPHER JOHNSON, MARK KOPEN, GENE LEINWEBER, WILLIAM F. LONSDALE, JOHN T. MCDONALD, ALISA MESTICHELLI, BERNADETTE MYER, KEVIN ROE, BRIAN SALVATORE, MICHAEL SHAD, SABOOR THOMAS, JEFFREY A. WALTERS, GARY WASHINGTON, MICHAEL WHEELER, JOSEPH BRIDGE, JASON FOSTER, BARBARA A. GILLARD, BRYAN M. KARASIK, ELLEN KUMAR, RACHNA MIKLOS, MARK MOSER, MICHAEL T. JEWELL, SCOTT D. MONTROY, ROBERT G. ROHRER, DANIEL C. VALLEY, DANA R. DAVIS, DAVID A. MASH, DEBORAH C. UNDALE, ANITA H. SMITH, ANNA M. TABOR, DAVID E. ROCHE, NANCY V. MCLEAN, JEFFREY A. VATANIAN, NEGIN ROBINSON, KARNA L. SOBIN, LESLIE BARCUS, MARY E. VALENTINO, KIMBERLY M. QI, LIQUN HUNTER, STEVEN HARIHARAN, PUSHPA SINGH, SHILPI UM, KI SUNG MATOSE, TAKUNDA TOMASZEWSKI, MARIA M. BARKER, LAURA K. MOSAVEL, MAGHBOEBA SIMINOFF, LAURA A. TRAINO, HEATHER M. FLICEK, PAUL JUETTEMANN, THOMAS RUFFIER, MAGALI SHEPPARD, DAN TAYLOR, KIERON TREVANION, STEPHEN J. ZERBINO, DANIEL R. CRAFT, BRIAN GOLDMAN, MARY HAEUSSLER, MAXIMILIAN KENT, W. JAMES LEE, CHRISTOPHER M. PATEN, BENEDICT ROSENBLOOM, KATE R. VIVIAN, JOHN ZHU, JINGCHUN AGUET, FRANÇOIS BROWN, ANDREW A. CASTEL, STEPHANE E. DAVIS, JOE R. HE, YUAN JO, BRIAN MOHAMMADI, PEJMAN PARK, YOSON PARSANA, PRINCY SEGRÈ, AYELLET V. STROBER, BENJAMIN J. ZAPPALA, ZACHARY CUMMINGS, BERYL B. GELFAND, ELLEN T. HADLEY, KANE HUANG, KATHERINE H. LEK, MONKOL LI, XIAO NEDZEL, JARED L. NGUYEN, DUYEN Y. NOBLE, MICHAEL S. SULLIVAN, TIMOTHY J. TUKIAINEN, TARU MACARTHUR, DANIEL G. GETZ, GAD ADDINGTON, ANJENE Guan, Ping KOESTER, SUSAN LITTLE, A. ROGER LOCKHART, NICOLE C. MOORE, HELEN M. RAO, ABHI STRUEWING, JEFFERY P. VOLPI, SIMONA BRIGHAM, LORI E. HASZ, RICHARD HUNTER, MARCUS JOHNS, CHRISTOPHER JOHNSON, MARK KOPEN, GENE LEINWEBER, WILLIAM F. LONSDALE, JOHN T. MCDONALD, ALISA MESTICHELLI, BERNADETTE MYER, KEVIN ROE, BRYAN SALVATORE, MICHAEL SHAD, SABOOR THOMAS, JEFFREY A. WALTERS, GARY WASHINGTON, MICHAEL WHEELER, JOSEPH BRIDGE, JASON FOSTER, BARBARA A. GILLARD, BRYAN M. KARASIK, ELLEN KUMAR, RACHNA MIKLOS, MARK MOSER, MICHAEL T. JEWELL, SCOTT D. MONTROY, ROBERT G. ROHRER, DANIEL C. VALLEY, DANA MASH, DEBORAH C. DAVIS, DAVID A. SOBIN, LESLIE BARCUS, MARY E. BRANTON, PHILIP A. ABELL, NATHAN S. BALLIU, BRUNILDA DELANEAU, OLIVIER FRÉSARD, LAURE GAMAZON, ERIC R. GARRIDO-MARTÍN, DIEGO GEWIRTZ, ARIEL D. H. GLINER, GENNA GLOUDEMANS, MICHAEL J. HAN, BUHM HE, AMY Z. HORMOZDIARI, FARHAD LI, XIN LIU, BOXIANG KANG, EUN YONG MCDOWELL, IAN C. ONGEN, HALIT PALOWITCH, JOHN J. PETERSON, CHRISTINE B. QUON, GERALD RIPKE, STEPHAN SAHA, ASHIS SHABALIN, ANDREY A. SHIMKO, TYLER C. SUL, JAE HOON TERAN, NICOLE A. TSANG, EMILY K. ZHANG, HAILEI ZHOU, YI-HUI BUSTAMANTE, CARLOS D. COX, NANCY J. GUIGÓ, RODERIC KELLIS, MANOLIS MCCARTHY, MARK I. CONRAD, DONALD F. ESKIN, ELEAZAR LI, GEN NOBEL, ANDREW B. SABATTI, CHIARA STRANGER, BARBARA E. WEN, XIAOQUAN WRIGHT, FRED A. ARDLIE, KRISTIN G. DERMITZAKIS, EMMANOUIL T. LAPPALAINEN, TUULI BATTLE, ALEXIS BROWN, CHRISTOPHER D. ENGELHARDT, BARBARA E. MONTGOMERY, STEPHEN B. ; Genetic effects on gene expression across human tissues. NATURE , v. 550, p. 204-213, 2017.
2017 TUKIAINEN, TARU VILLANI, ALEXANDRA-CHLOÉ YEN, ANGELA RIVAS, MANUEL A. MARSHALL, JAMIE L. SATIJA, RAHUL AGUIRRE, MATT GAUTHIER, LAURA FLEHARTY, MARK KIRBY, ANDREW CUMMINGS, BERYL B. CASTEL, STEPHANE E. KARCZEWSKI, KONRAD J. AGUET, FRANÇOIS BYRNES, ANDREA AGUET, FRANÇOIS ARDLIE, KRISTIN G. CUMMINGS, BERYL B. GELFAND, ELLEN T. GETZ, GAD HADLEY, KANE HANDSAKER, ROBERT E. HUANG, KATHERINE H. KASHIN, SEVA KARCZEWSKI, KONRAD J. , et al. LEK, MONKOL LI, XIAO MACARTHUR, DANIEL G. NEDZEL, JARED L. NGUYEN, DUYEN T. NOBLE, MICHAEL S. SEGRÈ, AYELLET V. TROWBRIDGE, CASANDRA A. TUKIAINEN, TARU ABELL, NATHAN S. BALLIU, BRUNILDA BARSHIR, RUTH BASHA, OMER BATTLE, ALEXIS BOGU, GIREESH K. BROWN, ANDREW BROWN, CHRISTOPHER D. CASTEL, STEPHANE E. CHEN, LIN S. CHIANG, COLBY CONRAD, DONALD F. COX, NANCY J. DAMANI, FARHAN N. DAVIS, JOE R. DELANEAU, OLIVIER DERMITZAKIS, EMMANOUIL T. ENGELHARDT, BARBARA E. ESKIN, ELEAZAR FERREIRA, PEDRO G. FRÉSARD, LAURE GAMAZON, ERIC R. GARRIDO-MARTÍN, DIEGO GEWIRTZ, ARIEL D. H. GLINER, GENNA GLOUDEMANS, MICHAEL J. GUIGO, RODERIC HALL, IRA M. HAN, BUHM HE, YUAN HORMOZDIARI, FARHAD HOWALD, CEDRIC KYUNG IM, HAE JO, BRIAN YONG KANG, EUN KIM, YUNGIL KIM-HELLMUTH, SARAH LAPPALAINEN, TUULI LI, GEN LI, XIN LIU, BOXIANG MANGUL, SERGHEI MCCARTHY, MARK I. MCDOWELL, IAN C. MOHAMMADI, PEJMAN MONLONG, JEAN MONTGOMERY, STEPHEN B. MUÑOZ-AGUIRRE, MANUEL NDUNGU, ANNE W. NICOLAE, DAN L. NOBEL, ANDREW B. OLIVA, MERITXELL ONGEN, HALIT PALOWITCH, JOHN J. PANOUSIS, NIKOLAOS PAPASAIKAS, PANAGIOTIS PARK, YOSON PARSANA, PRINCY PAYNE, ANTHONY J. PETERSON, CHRISTINE B. QUAN, JIE REVERTER, FERRAN SABATTI, CHIARA SAHA, ASHIS Sammeth, Michael SCOTT, ALEXANDRA J. SHABALIN, ANDREY A. SODAEI, REZA STEPHENS, MATTHEW STRANGER, BARBARA E. STROBER, BENJAMIN J. SUL, JAE HOON TSANG, EMILY K. URBUT, SARAH VAN DE BUNT, MARTIJN WANG, GAO WEN, XIAOQUAN WRIGHT, FRED A. XI, HUALIN S. YEGER-LOTEM, ESTI ZAPPALA, ZACHARY ZAUGG, JUDITH B. ZHOU, YI-HUI AKEY, JOSHUA M. BATES, DANIEL CHAN, JOANNE CHEN, LIN S. CLAUSSNITZER, MELINA DEMANELIS, KATHRYN DIEGEL, MORGAN DOHERTY, JENNIFER A. FEINBERG, ANDREW P. FERNANDO, MARIAN S. HALOW, JESSICA HANSEN, KASPER D. HAUGEN, ERIC HICKEY, PETER F. HOU, LEI JASMINE, FARZANA JIAN, RUIQI JIANG, LIHUA JOHNSON, AUDRA KAUL, RAJINDER KELLIS, MANOLIS KIBRIYA, MUHAMMAD G. LEE, KRISTEN LI, JIN BILLY LI, QIN LI, XIAO LIN, JESSICA LIN, SHIN LINDER, SANDRA LINKE, CAROLINE LIU, YAPING MAURANO, MATTHEW T. MOLINIE, BENOIT MONTGOMERY, STEPHEN B. NELSON, JEMMA NERI, FIDENCIO J. OLIVA, MERITXELL PARK, YONGJIN PIERCE, BRANDON L. RINALDI, NICOLA J. RIZZARDI, LINDSAY F. SANDSTROM, RICHARD SKOL, ANDREW SMITH, KEVIN S. SNYDER, MICHAEL P. STAMATOYANNOPOULOS, JOHN STRANGER, BARBARA E. TANG, HUA TSANG, EMILY K. WANG, LI WANG, MENG VAN WITTENBERGHE, NICHOLAS WU, FAN ZHANG, RUI NIERRAS, CONCEPCION R. BRANTON, PHILIP A. CARITHERS, LATARSHA J. Guan, Ping MOORE, HELEN M. RAO, ABHI VAUGHT, JIMMIE B. GOULD, SARAH E. LOCKART, NICOLE C. MARTIN, CASEY STRUEWING, JEFFERY P. VOLPI, SIMONA ADDINGTON, ANJENE M. KOESTER, SUSAN E. LITTLE, A. ROGER BRIGHAM, LORI E. HASZ, RICHARD HUNTER, MARCUS JOHNS, CHRISTOPHER JOHNSON, MARK KOPEN, GENE LEINWEBER, WILLIAM F. LONSDALE, JOHN T. MCDONALD, ALISA MESTICHELLI, BERNADETTE MYER, KEVIN ROE, BRIAN SALVATORE, MICHAEL SHAD, SABOOR THOMAS, JEFFREY A. WALTERS, GARY WASHINGTON, MICHAEL WHEELER, JOSEPH BRIDGE, JASON FOSTER, BARBARA A. GILLARD, BRYAN M. KARASIK, ELLEN KUMAR, RACHNA MIKLOS, MARK MOSER, MICHAEL T. JEWELL, SCOTT D. MONTROY, ROBERT G. ROHRER, DANIEL C. VALLEY, DANA R. DAVIS, DAVID A. MASH, DEBORAH C. UNDALE, ANITA H. SMITH, ANNA M. TABOR, DAVID E. ROCHE, NANCY V. MCLEAN, JEFFREY A. VATANIAN, NEGIN ROBINSON, KARNA L. SOBIN, LESLIE BARCUS, MARY E. VALENTINO, KIMBERLY M. QI, LIQUN HUNTER, STEVEN HARIHARAN, PUSHPA SINGH, SHILPI UM, KI SUNG MATOSE, TAKUNDA TOMASZEWSKI, MARIA M. BARKER, LAURA K. MOSAVEL, MAGHBOEBA SIMINOFF, LAURA A. TRAINO, HEATHER M. FLICEK, PAUL JUETTEMANN, THOMAS RUFFIER, MAGALI SHEPPARD, DAN TAYLOR, KIERON TREVANION, STEPHEN J. ZERBINO, DANIEL R. CRAFT, BRIAN GOLDMAN, MARY HAEUSSLER, MAXIMILIAN KENT, W. JAMES LEE, CHRISTOPHER M. PATEN, BENEDICT ROSENBLOOM, KATE R. VIVIAN, JOHN ZHU, JINGCHUN LAPPALAINEN, TUULI REGEV, AVIV ARDLIE, KRISTIN G. HACOHEN, NIR MACARTHUR, DANIEL G. ; Landscape of X chromosome inactivation across human tissues. NATURE , v. 550, p. 244-248, 2017.
2017 TAN, MENG HOW LI, QIN SHANMUGAM, RAGHUVARAN PISKOL, ROBERT KOHLER, JENNEFER YOUNG, AMY N. LIU, KAIWEN IVY ZHANG, RUI RAMASWAMI, GOKUL ARIYOSHI, KENTARO GUPTE, ANKITA KEEGAN, LIAM P. GEORGE, CYRIL X. RAMU, AVINASH HUANG, NI POLLINA, ELIZABETH A. LEEMAN, DENA S. RUSTIGHI, ALESSANDRA GOH, Y. P. SHARON AGUET, FRANÇOIS ARDLIE, KRISTIN G. CUMMINGS, BERYL B. GELFAND, ELLEN T. GETZ, GAD HADLEY, KANE , et al. HANDSAKER, ROBERT E. HUANG, KATHERINE H. KASHIN, SEVA KARCZEWSKI, KONRAD J. LEK, MONKOL LI, XIAO MACARTHUR, DANIEL G. NEDZEL, JARED L. NGUYEN, DUYEN T. NOBLE, MICHAEL S. SEGRÈ, AYELLET V. TROWBRIDGE, CASANDRA A. TUKIAINEN, TARU ABELL, NATHAN S. BALLIU, BRUNILDA BARSHIR, RUTH BASHA, OMER BATTLE, ALEXIS BOGU, GIREESH K. BROWN, ANDREW BROWN, CHRISTOPHER D. CASTEL, STEPHANE E. CHEN, LIN S. CHIANG, COLBY CONRAD, DONALD F. COX, NANCY J. DAMANI, FARHAN N. DAVIS, JOE R. DELANEAU, OLIVIER DERMITZAKIS, EMMANOUIL T. ENGELHARDT, BARBARA E. ESKIN, ELEAZAR FERREIRA, PEDRO G. FRÉSARD, LAURE GAMAZON, ERIC R. GARRIDO-MARTÍN, DIEGO GEWIRTZ, ARIEL D. H. GLINER, GENNA GLOUDEMANS, MICHAEL J. GUIGO, RODERIC HALL, IRA M. HAN, BUHM HE, YUAN HORMOZDIARI, FARHAD HOWALD, CEDRIC KYUNG IM, HAE JO, BRIAN YONG KANG, EUN KIM, YUNGIL KIM-HELLMUTH, SARAH LAPPALAINEN, TUULI LI, GEN LI, XIN LIU, BOXIANG MANGUL, SERGHEI MCCARTHY, MARK I. MCDOWELL, IAN C. MOHAMMADI, PEJMAN MONLONG, JEAN MONTGOMERY, STEPHEN B. MUÑOZ-AGUIRRE, MANUEL NDUNGU, ANNE W. NICOLAE, DAN L. NOBEL, ANDREW B. OLIVA, MERITXELL ONGEN, HALIT PALOWITCH, JOHN J. PANOUSIS, NIKOLAOS PAPASAIKAS, PANAGIOTIS PARK, YOSON PARSANA, PRINCY PAYNE, ANTHONY J. PETERSON, CHRISTINE B. QUAN, JIE REVERTER, FERRAN SABATTI, CHIARA SAHA, ASHIS Sammeth, Michael SCOTT, ALEXANDRA J. SHABALIN, ANDREY A. SODAEI, REZA STEPHENS, MATTHEW STRANGER, BARBARA E. STROBER, BENJAMIN J. SUL, JAE HOON TSANG, EMILY K. URBUT, SARAH VAN DE BUNT, MARTIJN WANG, GAO WEN, XIAOQUAN WRIGHT, FRED A. XI, HUALIN S. YEGER-LOTEM, ESTI ZAPPALA, ZACHARY ZAUGG, JUDITH B. ZHOU, YI-HUI AKEY, JOSHUA M. BATES, DANIEL CHAN, JOANNE CHEN, LIN S. CLAUSSNITZER, MELINA DEMANELIS, KATHRYN DIEGEL, MORGAN DOHERTY, JENNIFER A. FEINBERG, ANDREW P. FERNANDO, MARIAN S. HALOW, JESSICA HANSEN, KASPER D. HAUGEN, ERIC HICKEY, PETER F. HOU, LEI JASMINE, FARZANA JIAN, RUIQI JIANG, LIHUA JOHNSON, AUDRA KAUL, RAJINDER KELLIS, MANOLIS KIBRIYA, MUHAMMAD G. LEE, KRISTEN LI, JIN BILLY LI, QIN LI, XIAO LIN, JESSICA LIN, SHIN LINDER, SANDRA LINKE, CAROLINE LIU, YAPING MAURANO, MATTHEW T. MOLINIE, BENOIT MONTGOMERY, STEPHEN B. NELSON, JEMMA NERI, FIDENCIO J. OLIVA, MERITXELL PARK, YONGJIN PIERCE, BRANDON L. RINALDI, NICOLA J. RIZZARDI, LINDSAY F. SANDSTROM, RICHARD SKOL, ANDREW SMITH, KEVIN S. SNYDER, MICHAEL P. STAMATOYANNOPOULOS, JOHN STRANGER, BARBARA E. TANG, HUA TSANG, EMILY K. WANG, LI WANG, MENG VAN WITTENBERGHE, NICHOLAS WU, FAN ZHANG, RUI NIERRAS, CONCEPCION R. BRANTON, PHILIP A. CARITHERS, LATARSHA J. Guan, Ping MOORE, HELEN M. RAO, ABHI VAUGHT, JIMMIE B. GOULD, SARAH E. LOCKART, NICOLE C. MARTIN, CASEY STRUEWING, JEFFERY P. VOLPI, SIMONA ADDINGTON, ANJENE M. KOESTER, SUSAN E. LITTLE, A. ROGER BRIGHAM, LORI E. HASZ, RICHARD HUNTER, MARCUS JOHNS, CHRISTOPHER JOHNSON, MARK KOPEN, GENE LEINWEBER, WILLIAM F. LONSDALE, JOHN T. MCDONALD, ALISA MESTICHELLI, BERNADETTE MYER, KEVIN ROE, BRIAN SALVATORE, MICHAEL SHAD, SABOOR THOMAS, JEFFREY A. WALTERS, GARY WASHINGTON, MICHAEL WHEELER, JOSEPH BRIDGE, JASON FOSTER, BARBARA A. GILLARD, BRYAN M. KARASIK, ELLEN KUMAR, RACHNA MIKLOS, MARK MOSER, MICHAEL T. JEWELL, SCOTT D. MONTROY, ROBERT G. ROHRER, DANIEL C. VALLEY, DANA R. DAVIS, DAVID A. MASH, DEBORAH C. UNDALE, ANITA H. SMITH, ANNA M. TABOR, DAVID E. ROCHE, NANCY V. MCLEAN, JEFFREY A. VATANIAN, NEGIN ROBINSON, KARNA L. SOBIN, LESLIE BARCUS, MARY E. VALENTINO, KIMBERLY M. QI, LIQUN HUNTER, STEVEN HARIHARAN, PUSHPA SINGH, SHILPI UM, KI SUNG MATOSE, TAKUNDA TOMASZEWSKI, MARIA M. BARKER, LAURA K. MOSAVEL, MAGHBOEBA SIMINOFF, LAURA A. TRAINO, HEATHER M. FLICEK, PAUL JUETTEMANN, THOMAS RUFFIER, MAGALI SHEPPARD, DAN TAYLOR, KIERON TREVANION, STEPHEN J. ZERBINO, DANIEL R. CRAFT, BRIAN GOLDMAN, MARY HAEUSSLER, MAXIMILIAN KENT, W. JAMES LEE, CHRISTOPHER M. PATEN, BENEDICT ROSENBLOOM, KATE R. VIVIAN, JOHN ZHU, JINGCHUN CHAWLA, AJAY DEL SAL, GIANNINO PELTZ, GARY BRUNET, ANNE CONRAD, DONALD F. SAMUEL, CHARLES E. O?CONNELL, MARY A. WALKLEY, CARL R. NISHIKURA, KAZUKO LI, JIN BILLY ; Dynamic landscape and regulation of RNA editing in mammals. NATURE , v. 550, p. 249-254, 2017.
2017 LI, XIN KIM, YUNGIL TSANG, EMILY K. DAVIS, JOE R. DAMANI, FARHAN N. CHIANG, COLBY HESS, GAELEN T. ZAPPALA, ZACHARY STROBER, BENJAMIN J. SCOTT, ALEXANDRA J. LI, AMY GANNA, ANDREA BASSIK, MICHAEL C. MERKER, JASON D. AGUET, FRANÇOIS ARDLIE, KRISTIN G. CUMMINGS, BERYL B. GELFAND, ELLEN T. GETZ, GAD HADLEY, KANE HANDSAKER, ROBERT E. HUANG, KATHERINE H. KASHIN, SEVA KARCZEWSKI, KONRAD J. LEK, MONKOL , et al. LI, XIAO MACARTHUR, DANIEL G. NEDZEL, JARED L. NGUYEN, DUYEN T. NOBLE, MICHAEL S. SEGRÈ, AYELLET V. TROWBRIDGE, CASANDRA A. TUKIAINEN, TARU ABELL, NATHAN S. BALLIU, BRUNILDA BARSHIR, RUTH BASHA, OMER BATTLE, ALEXIS BOGU, GIREESH K. BROWN, ANDREW BROWN, CHRISTOPHER D. CASTEL, STEPHANE E. CHEN, LIN S. CHIANG, COLBY CONRAD, DONALD F. COX, NANCY J. DAMANI, FARHAN N. DAVIS, JOE R. DELANEAU, OLIVIER DERMITZAKIS, EMMANOUIL T. ENGELHARDT, BARBARA E. ESKIN, ELEAZAR FERREIRA, PEDRO G. FRÉSARD, LAURE GAMAZON, ERIC R. GARRIDO-MARTÍN, DIEGO GEWIRTZ, ARIEL D.H. GLINER, GENNA GLOUDEMANS, MICHAEL J. GUIGO, RODERIC HALL, IRA M. HAN, BUHM HE, YUAN HORMOZDIARI, FARHAD HOWALD, CEDRIC KYUNG IM, HAE JO, BRIAN YONG KANG, EUN KIM, YUNGIL KIM-HELLMUTH, SARAH LAPPALAINEN, TUULI LI, GEN LI, XIN LIU, BOXIANG MANGUL, SERGHEI MCCARTHY, MARK I. MCDOWELL, IAN C. MOHAMMADI, PEJMAN MONLONG, JEAN MONTGOMERY, STEPHEN B. MUÑOZ-AGUIRRE, MANUEL NDUNGU, ANNE W. NICOLAE, DAN L. NOBEL, ANDREW B. OLIVA, MERITXELL ONGEN, HALIT PALOWITCH, JOHN J. PANOUSIS, NIKOLAOS PAPASAIKAS, PANAGIOTIS PARK, YOSON PARSANA, PRINCY PAYNE, ANTHONY J. PETERSON, CHRISTINE B. QUAN, JIE REVERTER, FERRAN SABATTI, CHIARA SAHA, ASHIS Sammeth, Michael SCOTT, ALEXANDRA J. SHABALIN, ANDREY A. SODAEI, REZA STEPHENS, MATTHEW STRANGER, BARBARA E. STROBER, BENJAMIN J. SUL, JAE HOON TSANG, EMILY K. URBUT, SARAH VAN DE BUNT, MARTIJN WANG, GAO WEN, XIAOQUAN WRIGHT, FRED A. XI, HUALIN S. YEGER-LOTEM, ESTI ZAPPALA, ZACHARY ZAUGG, JUDITH B. ZHOU, YI-HUI AKEY, JOSHUA M. BATES, DANIEL CHAN, JOANNE CHEN, LIN S. CLAUSSNITZER, MELINA DEMANELIS, KATHRYN DIEGEL, MORGAN DOHERTY, JENNIFER A. FEINBERG, ANDREW P. FERNANDO, MARIAN S. HALOW, JESSICA HANSEN, KASPER D. HAUGEN, ERIC HICKEY, PETER F. HOU, LEI JASMINE, FARZANA JIAN, RUIQI JIANG, LIHUA JOHNSON, AUDRA KAUL, RAJINDER KELLIS, MANOLIS KIBRIYA, MUHAMMAD G. LEE, KRISTEN BILLY LI, JIN LI, QIN LI, XIAO LIN, JESSICA LIN, SHIN LINDER, SANDRA LINKE, CAROLINE LIU, YAPING MAURANO, MATTHEW T. MOLINIE, BENOIT MONTGOMERY, STEPHEN B. NELSON, JEMMA NERI, FIDENCIO J. OLIVA, MERITXELL PARK, YONGJIN PIERCE, BRANDON L. RINALDI, NICOLA J. RIZZARDI, LINDSAY F. SANDSTROM, RICHARD SKOL, ANDREW SMITH, KEVIN S. SNYDER, MICHAEL P. STAMATOYANNOPOULOS, JOHN STRANGER, BARBARA E. TANG, HUA TSANG, EMILY K. WANG, LI WANG, MENG VAN WITTENBERGHE, NICHOLAS WU, FAN ZHANG, RUI NIERRAS, CONCEPCION R. BRANTON, PHILIP A. CARITHERS, LATARSHA J. Guan, Ping MOORE, HELEN M. RAO, ABHI VAUGHT, JIMMIE B. GOULD, SARAH E. LOCKART, NICOLE C. MARTIN, CASEY STRUEWING, JEFFERY P. VOLPI, SIMONA ADDINGTON, ANJENE M. KOESTER, SUSAN E. LITTLE, A. ROGER BRIGHAM, LORI E. HASZ, RICHARD HUNTER, MARCUS JOHNS, CHRISTOPHER JOHNSON, MARK KOPEN, GENE LEINWEBER, WILLIAM F. LONSDALE, JOHN T. MCDONALD, ALISA MESTICHELLI, BERNADETTE MYER, KEVIN ROE, BRIAN SALVATORE, MICHAEL SHAD, SABOOR THOMAS, JEFFREY A. WALTERS, GARY WASHINGTON, MICHAEL WHEELER, JOSEPH BRIDGE, JASON FOSTER, BARBARA A. GILLARD, BRYAN M. KARASIK, ELLEN KUMAR, RACHNA MIKLOS, MARK MOSER, MICHAEL T. JEWELL, SCOTT D. MONTROY, ROBERT G. ROHRER, DANIEL C. VALLEY, DANA R. DAVIS, DAVID A. MASH, DEBORAH C. UNDALE, ANITA H. SMITH, ANNA M. TABOR, DAVID E. ROCHE, NANCY V. MCLEAN, JEFFREY A. VATANIAN, NEGIN ROBINSON, KARNA L. SOBIN, LESLIE BARCUS, MARY E. VALENTINO, KIMBERLY M. QI, LIQUN HUNTER, STEVEN HARIHARAN, PUSHPA SINGH, SHILPI UM, KI SUNG MATOSE, TAKUNDA TOMASZEWSKI, MARIA M. BARKER, LAURA K. MOSAVEL, MAGHBOEBA SIMINOFF, LAURA A. TRAINO, HEATHER M. FLICEK, PAUL JUETTEMANN, THOMAS RUFFIER, MAGALI SHEPPARD, DAN TAYLOR, KIERON TREVANION, STEPHEN J. ZERBINO, DANIEL R. CRAFT, BRIAN GOLDMAN, MARY HAEUSSLER, MAXIMILIAN KENT, W. JAMES LEE, CHRISTOPHER M. PATEN, BENEDICT ROSENBLOOM, KATE R. VIVIAN, JOHN ZHU, JINGCHUN HALL, IRA M. BATTLE, ALEXIS MONTGOMERY, STEPHEN B. ; The impact of rare variation on gene expression across tissues. NATURE , v. 550, p. 239-243, 2017.
2016 FERREIRA, PEDRO G. OTI, MARTIN BARANN, MATTHIAS WIELAND, THOMAS EZQUINA, SUZANA FRIEDLÄNDER, MARC R. RIVAS, MANUEL A. ESTEVE-CODINA, ANNA ESTIVILL, XAVIER GUIGÓ, RODERIC DERMITZAKIS, EMMANOUIL ANTONARAKIS, STYLIANOS MEITINGER, THOMAS STROM, TIM M PALOTIE, AARNO FRANÇOIS DELEUZE, JEAN SUDBRAK, RALF LERACH, HANS GUT, IVO SYVÄNEN, ANN-CHRISTINE GYLLENSTEN, ULF SCHREIBER, STEFAN ROSENSTIEL, PHILIP BRUNNER, HAN VELTMAN, JORIS , et al. HOEN, PETER A.C.T JAN VAN OMMEN, GERT CARRACEDO, ANGEL BRAZMA, ALVIS FLICEK, PAUL CAMBON-THOMSEN, ANNE MANGION, JONATHAN BENTLEY, DAVID HAMOSH, ADA ROSENSTIEL, PHILIP STROM, TIM M LAPPALAINEN, TUULI GUIGÓ, RODERIC Sammeth, Michael ; Sequence variation between 462 human individuals fine-tunes functional sites of RNA processing. Scientific Reports , v. 6, p. 32406, 2016.
2015 RIVAS, M. A. PIRINEN, M. CONRAD, D. F. LEK, M. TSANG, E. K. KARCZEWSKI, K. J. MALLER, J. B. KUKURBA, K. R. DELUCA, D. S. FROMER, M. FERREIRA, P. G. SMITH, K. S. ZHANG, R. ZHAO, F. BANKS, E. POPLIN, R. RUDERFER, D. M. PURCELL, S. M. TUKIAINEN, T. MINIKEL, E. V. STENSON, P. D. COOPER, D. N. HUANG, K. H. SULLIVAN, T. J. NEDZEL, J. , et al. BUSTAMANTE, C. D. LI, J. B. DALY, M. J. GUIGO, R. DONNELLY, P. ARDLIE, K. SAMMETH, M. DERMITZAKIS, E. T. MCCARTHY, M. I. MONTGOMERY, S. B. LAPPALAINEN, T. MACARTHUR, D. G. SEGRE, A. V. YOUNG, T. R. GELFAND, E. T. TROWBRIDGE, C. A. WARD, L. D. KHERADPOUR, P. IRIARTE, B. MENG, Y. PALMER, C. D. ESKO, T. WINCKLER, W. HIRSCHHORN, J. KELLIS, M. GETZ, G. SHABLIN, A. A. LI, G. ZHOU, Y.-H. NOBEL, A. B. RUSYN, I. WRIGHT, F. A. BATTLE, A. MOSTAFAVI, S. MELE, M. REVERTER, F. GOLDMANN, J. KOLLER, D. GAMAZON, E. R. IM, H. K. KONKASHBAEV, A. NICOLAE, D. L. COX, N. J. FLUTRE, T. WEN, X. STEPHENS, M. PRITCHARD, J. K. TU, Z. ZHANG, B. HUANG, T. LONG, Q. LIN, L. YANG, J. ZHU, J. LIU, J. BROWN, A. MESTICHELLI, B. TIDWELL, D. LO, E. SALVATORE, M. SHAD, S. THOMAS, J. A. LONSDALE, J. T. CHOI, R. C. KARASIK, E. RAMSEY, K. MOSER, M. T. FOSTER, B. A. GILLARD, B. M. SYRON, J. FLEMING, J. MAGAZINE, H. HASZ, R. WALTERS, G. D. BRIDGE, J. P. MIKLOS, M. SULLIVAN, S. BARKER, L. K. TRAINO, H. MOSAVEL, M. SIMINOFF, L. A. VALLEY, D. R. ROHRER, D. C. JEWEL, S. BRANTON, P. SOBIN, L. H. BARCUS, M. QI, L. HARIHARAN, P. WU, S. TABOR, D. SHIVE, C. SMITH, A. M. BUIA, S. A. UNDALE, A. H. ROBINSON, K. L. ROCHE, N. VALENTINO, K. M. BRITTON, A. BURGES, R. BRADBURY, D. HAMBRIGHT, K. W. SELESKI, J. KORZENIEWSKI, G. E. ERICKSON, K. MARCUS, Y. TEJADA, J. TAHERIAN, M. LU, C. ROBLES, B. E. BASILE, M. MASH, D. C. VOLPI, S. STRUEWING, J. P. TEMPLE, G. F. BOYER, J. COLANTUONI, D. LITTLE, R. KOESTER, S. CARITHERS, L. J. MOORE, H. M. GUAN, P. COMPTON, C. SAWYER, S. J. DEMCHOK, J. P. VAUGHT, J. B. RABINER, C. A. LOCKHART, N. C. FRIEDLANDER, M. R. 'T HOEN, P. A. C. MONLONG, J. GONZALEZ-PORTA, M. KURBATOVA, N. GRIEBEL, T. BARANN, M. WIELAND, T. GREGER, L. VAN ITERSON, M. ALMLOF, J. RIBECA, P. PULYAKHINA, I. ESSER, D. GIGER, T. TIKHONOV, A. SULTAN, M. BERTIER, G. LIZANO, E. BUERMANS, H. P. J. PADIOLEAU, I. SCHWARZMAYR, T. KARLBERG, O. ONGEN, H. KILPINEN, H. BELTRAN, S. GUT, M. KAHLEM, K. AMSTISLAVSKIY, V. STEGLE, O. FLICEK, P. STROM, T. M. LEHRACH, H. SCHREIBER, S. SUDBRAK, R. CARRACEDO, A. ANTONARAKIS, S. E. HASLER, R. SYVANEN, A.-C. VAN OMMEN, G.-J. BRAZMA, A. MEITINGER, T. ROSENSTIEL, P. GUT, I. G. ESTIVILL, X. ; Effect of predicted protein-truncating genetic variants on the human transcriptome. Science (New York, N.Y.) , v. 348, p. 666-669, 2015.
2015 MELE, M. ; FERREIRA, P. G. ; REVERTER, F. ; DELUCA, D. S. ; MONLONG, J. ; SAMMETH, M. ; YOUNG, T. R. ; GOLDMANN, J. M. ; PERVOUCHINE, D. D. ; SULLIVAN, T. J. ; JOHNSON, R. ; SEGRE, A. V. ; DJEBALI, S. ; NIARCHOU, A. ; CONSORTIUM, T. G. ; WRIGHT, F. A. ; LAPPALAINEN, T. ; CALVO, M. ; GETZ, G. ; DERMITZAKIS, E. T. ; ARDLIE, K. G. ; GUIGO, R. . The human transcriptome across tissues and individuals. Science (New York, N.Y.) , v. 348, p. 660-665, 2015.
2015 ARDLIE, K. G. DELUCA, D. S. SEGRE, A. V. SULLIVAN, T. J. YOUNG, T. R. GELFAND, E. T. TROWBRIDGE, C. A. MALLER, J. B. TUKIAINEN, T. LEK, M. WARD, L. D. KHERADPOUR, P. IRIARTE, B. MENG, Y. PALMER, C. D. ESKO, T. WINCKLER, W. HIRSCHHORN, J. N. KELLIS, M. MACARTHUR, D. G. GETZ, G. SHABALIN, A. A. LI, G. ZHOU, Y.-H. NOBEL, A. B. , et al. RUSYN, I. WRIGHT, F. A. LAPPALAINEN, T. FERREIRA, P. G. ONGEN, H. RIVAS, M. A. BATTLE, A. MOSTAFAVI, S. MONLONG, J. SAMMETH, M. MELE, M. REVERTER, F. GOLDMANN, J. M. KOLLER, D. GUIGO, R. MCCARTHY, M. I. DERMITZAKIS, E. T. GAMAZON, E. R. IM, H. K. KONKASHBAEV, A. NICOLAE, D. L. COX, N. J. FLUTRE, T. WEN, X. STEPHENS, M. PRITCHARD, J. K. TU, Z. ZHANG, B. HUANG, T. LONG, Q. LIN, L. YANG, J. ZHU, J. LIU, J. BROWN, A. MESTICHELLI, B. TIDWELL, D. LO, E. SALVATORE, M. SHAD, S. THOMAS, J. A. LONSDALE, J. T. MOSER, M. T. GILLARD, B. M. KARASIK, E. RAMSEY, K. CHOI, C. FOSTER, B. A. SYRON, J. FLEMING, J. MAGAZINE, H. HASZ, R. WALTERS, G. D. BRIDGE, J. P. MIKLOS, M. SULLIVAN, S. BARKER, L. K. TRAINO, H. M. MOSAVEL, M. SIMINOFF, L. A. VALLEY, D. R. ROHRER, D. C. JEWELL, S. D. BRANTON, P. A. SOBIN, L. H. BARCUS, M. QI, L. MCLEAN, J. HARIHARAN, P. UM, K. S. WU, S. TABOR, D. SHIVE, C. SMITH, A. M. BUIA, S. A. UNDALE, A. H. ROBINSON, K. L. ROCHE, N. VALENTINO, K. M. BRITTON, A. BURGES, R. BRADBURY, D. HAMBRIGHT, K. W. SELESKI, J. KORZENIEWSKI, G. E. ERICKSON, K. MARCUS, Y. TEJADA, J. TAHERIAN, M. LU, C. BASILE, M. MASH, D. C. VOLPI, S. STRUEWING, J. P. TEMPLE, G. F. BOYER, J. COLANTUONI, D. LITTLE, R. KOESTER, S. CARITHERS, L. J. MOORE, H. M. GUAN, P. COMPTON, C. SAWYER, S. J. DEMCHOK, J. P. VAUGHT, J. B. RABINER, C. A. LOCKHART, N. C. ARDLIE, K. G. GETZ, G. WRIGHT, F. A. KELLIS, M. VOLPI, S. DERMITZAKIS, E. T. ; The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans. Science (New York, N.Y.) , v. 348, p. 648-660, 2015.
2015 YANG, JIALIANG HUANG, TAO PETRALIA, FRANCESCA LONG, QUAN ZHANG, BIN ARGMANN, CARMEN ZHAO, YONG MOBBS, CHARLES V. SCHADT, ERIC E. Zhu, Jun TU, ZHIDONG ARDLIE, KRISTIN G. DELUCA, DAVID S. SEGRÈ, AYELLET V. SULLIVAN, TIMOTHY J. YOUNG, TAYLOR R. GELFAND, ELLEN T. TROWBRIDGE, CASANDRA A. MALLER, JULIAN B. TUKIAINEN, TARU LEK, MONKOL WARD, LUCAS D. KHERADPOUR, POUYA IRIARTE, BENJAMIN MENG, YAN , et al. PALMER, CAMERON D. WINCKLER, WENDY HIRSCHHORN, JOEL KELLIS, MANOLIS MACARTHUR, DANIEL G. GETZ, GAD SHABLIN, ANDREY A. LI, GEN ZHOU, YI-HUI NOBEL, ANDREW B. RUSYN, IVAN WRIGHT, FRED A. LAPPALAINEN, TUULI FERREIRA, PEDRO G. ONGEN, HALIT RIVAS, MANUEL A. BATTLE, ALEXIS MOSTAFAVI, SARA MONLONG, JEAN Sammeth, Michael MELE, MARTA REVERTER, FERRAN GOLDMAN, JAKOB KOLLER, DAPHNE GUIGO, RODERIC MCCARTHY, MARK I. DERMITZAKIS, EMMANOUIL T. GAMAZON, ERIC R. KONKASHBAEV, ANUAR NICOLAE, DAN L. COX, NANCY J. FLUTRE, TIMOTHÉE WEN, XIAOQUAN STEPHENS, MATTHEW PRITCHARD, JONATHAN K. LIN, LUAN LIU, JUN BROWN, AMANDA MESTICHELLI, BERNADETTE TIDWELL, DENEE LO, EDMUND SALVATORE, MIKE SHAD, SABOOR THOMAS, JEFFREY A. LONSDALE, JOHN T. CHOI, CHRISTOPHER KARASIK, ELLEN RAMSEY, KIMBERLY MOSER, MICHAEL T. FOSTER, BARBARA A. GILLARD, BRYAN M. SYRON, JOHN FLEMING, JOHNELLE MAGAZINE, HAROLD HASZ, RICK WALTERS, GARY D. BRIDGE, JASON P. MIKLOS, MARK SULLIVAN, SUSAN BARKER, LAURA K. TRAINO, HEATHER MOSAVEL, MAGBOEBA SIMINOFF, LAURA A. VALLEY, DANA R. ROHRER, DANIEL C. JEWEL, SCOTT BRANTON, PHILIP SOBIN, LESLIE H. QI, LIQUN HARIHARAN, PUSHPA WU, SHENPEI TABOR, DAVID SHIVE, CHARLES SMITH, ANNA M. BUIA, STEPHEN A. UNDALE, ANITA H. ROBINSON, KARNA L. ROCHE, NANCY VALENTINO, KIMBERLY M. BRITTON, ANGELA BURGES, ROBIN BRADBURY, DEBRA HAMBRIGHT, KENNETH W. SELESKI, JOHN KORZENIEWSKI, GREG E. ERICKSON, KENYON MARCUS, YVONNE TEJADA, JORGE TAHERIAN, MEHRAN LU, CHUNRONG ROBLES, BARNABY E. BASILE, MARGARET MASH, DEBORAH C. VOLPI, SIMONA STRUEWING, JEFF TEMPLE, GARY F. BOYER, JOY COLANTUONI, DEBORAH LITTLE, ROGER KOESTER, SUSAN CARITHERS, NCI LATARSHA J. MOORE, HELEN M. Guan, Ping COMPTON, CAROLYN SAWYER, SHERILYN J. DEMCHOK, JOANNE P. VAUGHT, JIMMIE B. RABINER, CHANA A. LOCKHART, NICOLE C. ; Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases. Scientific Reports , v. 5, p. 15145, 2015.
2015 PIERSON, E. DELUCA, D. SEGRE, A. V. SULLIVAN, T. J. YOUNG, T. R. GELFRAND, E. T. TOWBRIDGE, C. A. TUKIAINEN, T. LEK, M. KHERADPOUR, P. IRIARTE, B. MENG, Y. PALMER, C. D. WINCKLER, W. HORSHHORN, J. KELLIS, M. MACARTHUR, D. G. GETZ, G. SHABLIN, A. A. LI, G. ZHOU, Y. G. NOBEL, A. B. RUSYN, I. WRIGHT, F. A. LAPPALAINEN, T. , et al. FERREIRA, P. G. ONGEN, H. BATTLE, A. MOSTAFAVI, S. MONLONG, J. SAMMETH, M. MELE, M. REVERTER, F. GOLDMANN, J. KOLLER, D. RODERIC, G. MCCARTHY, M. I. DERMITZAKIS, E. T. GAMAZON, E. R. IM, H. K. KONKASHBAEV, A. NICOLAE, D. L. COX, N. J. FLUTRE, T. WEN, X. STEPHENS, M. PRITCHARD, J. K. TU, Z. ZHANG, B. HUANG, T. LONG, Q. LIN, L. YANG, J. ZHU, J. LIU, J. BROWN, A. MESTICHELLI, B. TIDWELL, D. LO, E. SALVATORE, M. SHAD, S. THOMAS, J. A. LONSDALE, J. T. CHOI, C. KARASIK, E. RAMSEY, K. MOSER, M. T. FOSTER, B. A. GILLARD, B. M. SYRON, J. FLEMING, J. MAGAZINE, H. HASZ, R. WALTERS, G. D. BRIDGE, J. P. MIKLOS, M. SULLIVAN, S. BARKER, L. K. TRAINO, H. MOSAVEL, M. SIMINOFF, L. A. VALLEY, D. R. ROHRER, D. C. JEWEL, S. BRANTON, P. SOBIN, L. H. QI, L. HARIHARAN, P. WU, S. TABOR, D. SHIVE, C. SMITH, A. M. BUIA, S. A. UNDALE, A. H. ROBINSON, K. L. ROCHE, N. VALENTINO, K. M. BRITTON, A. BURGES, R. BRADBURY, D. HAMBRIGHT, K. W. SELESKI, J. KORZENIEWSKI, G. E. ERICKSON, K. MARCUS, Y. TEJADA, J. TAHERIAN, M. LU, C. ROBLES, B. E. BASILE, M. MASH, D. C. VOLPI, S. STRUEWING, J. P. TEMPLE, G. F. BOYER, J. COLANTUONI, D. LITTLE, R. KOESTER, S. CARITHERS, L. J. MOORE, H. M. GUAN, P. COMPTON, C. SAWYER, S. J. DEMCHOK, J. P. VAUGHT, J. B. RABINER, C. A. LOCKHART, N. C. KOLLER, D. BATTLE, A. ARDLIE, K. GETZ, G. WRIGHT, F. A. KELLIS, M. VOLPI, SIMONA DERMITZAKIS, EMMANOUIL T ; Sharing and Specificity of Co-expression Networks across 35 Human Tissues. PLOS Computational Biology (Online) , v. 13, p. e1004220, 2015.
2014 SCHWARTZE, VOLKER U. ; WINTER, SASCHA ; SHELEST, EKATERINA ; MARCET-HOUBEN, MARINA ; HORN, FABIAN ; WEHNER, STEFANIE ; LINDE, JÖRG ; VALIANTE, VITO ; Sammeth, Michael ; RIEGE, KONSTANTIN ; NOWROUSIAN, MINOU ; KAERGER, KERSTIN ; JACOBSEN, ILSE D. ; MARZ, MANJA ; BRAKHAGE, AXEL A. ; GABALDÓN, TONI ; BÖCKER, SEBASTIAN ; VOIGT, KERSTIN . Gene Expansion Shapes Genome Architecture in the Human Pathogen Lichtheimia corymbifera: An Evolutionary Genomics Analysis in the Ancient Terrestrial Mucorales (Mucoromycotina). PLOS Genetics (Online) , v. 10, p. e1004496, 2014.
2014 VILLATE, O. ; TURATSINZE, J.-V. ; MASCALI, L. G. ; GRIECO, F. A. ; NOGUEIRA, T. C. ; CUNHA, D. A. ; NARDELLI, T. R. ; SAMMETH, M. ; SALUNKHE, V. A. ; ESGUERRA, J. L. S. ; ELIASSON, L. ; MARSELLI, L. ; MARCHETTI, P. ; EIZIRIK, D. L. . Nova1 is a master regulator of alternative splicing in pancreatic beta cells. Nucleic Acids Research , v. 42, p. 11818-11830, 2014.
2013 LONSDALE, JOHN THOMAS, JEFFREY SALVATORE, MIKE PHILLIPS, REBECCA LO, EDMUND SHAD, SABOOR HASZ, RICHARD WALTERS, GARY GARCIA, FERNANDO YOUNG, NANCY FOSTER, BARBARA MOSER, MIKE KARASIK, ELLEN GILLARD, BRYAN RAMSEY, KIMBERLEY SULLIVAN, SUSAN BRIDGE, JASON MAGAZINE, HAROLD SYRON, JOHN FLEMING, JOHNELLE SIMINOFF, LAURA TRAINO, HEATHER MOSAVEL, MAGHBOEBA BARKER, LAURA JEWELL, SCOTT , et al. ROHRER, DAN MAXIM, DAN FILKINS, DANA HARBACH, PHILIP CORTADILLO, EDDIE BERGHUIS, BREE TURNER, LISA HUDSON, ERIC FEENSTRA, KRISTIN SOBIN, LESLIE ROBB, JAMES BRANTON, PHILLIP KORZENIEWSKI, GREG SHIVE, CHARLES TABOR, DAVID QI, LIQUN GROCH, KEVIN NAMPALLY, SREENATH BUIA, STEVE ZIMMERMAN, ANGELA SMITH, ANNA BURGES, ROBIN ROBINSON, KARNA VALENTINO, KIM BRADBURY, DEBORAH COSENTINO, MARK DIAZ-MAYORAL, NORMA KENNEDY, MARY ENGEL, THERESA WILLIAMS, PENELOPE ERICKSON, KENYON ARDLIE, KRISTIN WINCKLER, WENDY GETZ, GAD DELUCA, DAVID MACARTHUR, DANIEL KELLIS, MANOLIS THOMSON, ALEXANDER YOUNG, TAYLOR GELFAND, ELLEN DONOVAN, MOLLY MENG, YAN GRANT, GEORGE MASH, DEBORAH MARCUS, YVONNE BASILE, MARGARET LIU, JUN Zhu, Jun TU, ZHIDONG COX, NANCY J NICOLAE, DAN L GAMAZON, ERIC R IM, HAE KYUNG KONKASHBAEV, ANUAR PRITCHARD, JONATHAN STEVENS, MATTHEW FLUTRE, TIMOTHÈE WEN, XIAOQUAN DERMITZAKIS, EMMANOUIL T LAPPALAINEN, TUULI GUIGO, RODERIC MONLONG, JEAN Sammeth, Michael KOLLER, DAPHNE BATTLE, ALEXIS MOSTAFAVI, SARA McCarthy, Mark RIVAS, MANUAL MALLER, JULIAN RUSYN, IVAN NOBEL, ANDREW WRIGHT, Fred SHABALIN, ANDREY FEOLO, MIKE SHAROPOVA, NATALIYA STURCKE, ANNE PASCHAL, JUSTIN ANDERSON, JAMES M WILDER, ELIZABETH L DERR, LESLIE K GREEN, ERIC D STRUEWING, JEFFERY P TEMPLE, GARY VOLPI, SIMONA BOYER, JOY T THOMSON, ELIZABETH J GUYER, MARK S NG, CATHY ABDALLAH, ASSYA COLANTUONI, DEBORAH INSEL, THOMAS R KOESTER, SUSAN E LITTLE, A ROGER BENDER, PATRICK K LEHNER, THOMAS YAO, YIN COMPTON, CAROLYN C VAUGHT, JIMMIE B SAWYER, SHERILYN LOCKHART, NICOLE C DEMCHOK, JOANNE MOORE, HELEN F ; The Genotype-Tissue Expression (GTEx) project. Nature Genetics , v. 45, p. 580-585, 2013.
2013 'T HOEN, PETER A C FRIEDLÄNDER, MARC R ALMLÖF, JONAS Sammeth, Michael PULYAKHINA, IRINA ANVAR, SEYED YAHYA LAROS, JEROEN F J BUERMANS, HENK P J KARLBERG, OLOF BRÄNNVALL, MATHIAS VAN OMMEN, GERT-JAN B ESTIVILL, XAVIER GUIGÓ, RODERIC SYVÄNEN, ANN-CHRISTINE GUT, IVO G DERMITZAKIS, EMMANOUIL T ANTONORAKIS, STYLIANOS E BRAZMA, ALVIS FLICEK, PAUL SCHREIBER, STEFAN ROSENSTIEL, PHILIP MEITINGER, THOMAS STROM, TIM M LEHRACH, HANS SUDBRAK, RALF , et al. CARRACEDO, ANGEL 'T HOEN, PETER A C PULYAKHINA, IRINA ANVAR, SEYED YAHYA LAROS, JEROEN F J BUERMANS, HENK P J VAN ITERSON, MAARTEN FRIEDLÄNDER, MARC R MONLONG, JEAN LIZANO, ESTHER BERTIER, GABRIELLE FERREIRA, PEDRO G Sammeth, Michael ALMLÖF, JONAS KARLBERG, OLOF BRÄNNVALL, MATHIAS RIBECA, PAOLO GRIEBEL, THASSO BELTRAN, SERGI GUT, MARTA KAHLEM, KATJA LAPPALAINEN, TUULI GIGER, THOMAS ONGEN, HALIT PADIOLEAU, ISMAEL KILPINEN, HELENA GONZÀLEZ-PORTA, MAR KURBATOVA, NATALJA TIKHONOV, ANDREW GREGER, LILIANA BARANN, MATTHIAS ESSER, DANIELA HÄSLER, ROBERT WIELAND, THOMAS SCHWARZMAYR, THOMAS SULTAN, MARC AMSTISLAVSKIY, VYACHESLAV DEN DUNNEN, JOHAN T VAN OMMEN, GERT-JAN B GUT, IVO G GUIGÓ, RODERIC ESTIVILL, XAVIER SYVÄNEN, ANN-CHRISTINE DERMITZAKIS, EMMANOUIL T LAPPALAINEN, TUULI ; Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories. Nature Biotechnology (Print) , v. 31, p. 1015-1022, 2013.
2013 LAPPALAINEN, TUULI Sammeth, Michael FRIEDLÄNDER, MARC R. 'T HOEN, PETER A. C. MONLONG, JEAN RIVAS, MANUEL A. GONZÀLEZ-PORTA, MAR KURBATOVA, NATALJA GRIEBEL, THASSO FERREIRA, PEDRO G. BARANN, MATTHIAS WIELAND, THOMAS GREGER, LILIANA VAN ITERSON, MAARTEN ALMLÖF, JONAS RIBECA, PAOLO PULYAKHINA, IRINA ESSER, DANIELA GIGER, THOMAS TIKHONOV, ANDREW SULTAN, MARC BERTIER, GABRIELLE MACARTHUR, DANIEL G. LEK, MONKOL LIZANO, ESTHER , et al. BUERMANS, HENK P. J. PADIOLEAU, ISMAEL SCHWARZMAYR, THOMAS KARLBERG, OLOF ONGEN, HALIT KILPINEN, HELENA BELTRAN, SERGI GUT, MARTA KAHLEM, KATJA AMSTISLAVSKIY, VYACHESLAV STEGLE, OLIVER PIRINEN, MATTI MONTGOMERY, STEPHEN B. DONNELLY, PETER MCCARTHY, MARK I. FLICEK, PAUL STROM, TIM M. THE GEUVADIS CONSORTIUM, NULL LEHRACH, HANS SCHREIBER, STEFAN SUDBRAK, RALF CARRACEDO, ÁNGEL ANTONARAKIS, STYLIANOS E. HÄSLER, ROBERT SYVÄNEN, ANN-CHRISTINE VAN OMMEN, GERT-JAN BRAZMA, ALVIS MEITINGER, THOMAS ROSENSTIEL, PHILIP GUIGÓ, RODERIC GUT, IVO G. ESTIVILL, XAVIER DERMITZAKIS, EMMANOUIL T. ; Transcriptome and genome sequencing uncovers functional variation in humans. Nature (London) , v. 501, p. 506-511, 2013.
2013 STEIJGER, TAMARA ABRIL, JOSEP F ENGSTRÖM, PÄR G KOKOCINSKI, FELIX ABRIL, JOSEP F AKERMAN, MARTIN ALIOTO, TYLER AMBROSINI, GIOVANNA ANTONARAKIS, STYLIANOS E BEHR, JONAS BERTONE, PAUL BOHNERT, REGINA BUCHER, PHILIPP CLOONAN, NICOLE DERRIEN, THOMAS DJEBALI, SARAH DU, JIANG DUDOIT, SANDRINE ENGSTRÖM, PÄR G GERSTEIN, MARK GINGERAS, THOMAS R GONZALEZ, DAVID GRIMMOND, SEAN M GUIGÓ, RODERIC HABEGGER, LUKAS , et al. HARROW, JENNIFER HUBBARD, TIM J ISELI, CHRISTIAN JEAN, GÉRALDINE KAHLES, ANDRÉ KOKOCINSKI, FELIX LAGARDE, JULIEN LENG, JING LEFEBVRE, GREGORY LEWIS, SUZANNA MORTAZAVI, ALI NIERMANN, PETER RÄTSCH, GUNNAR REYMOND, ALEXANDRE RIBECA, PAOLO RICHARD, HUGUES ROUGEMONT, JACQUES ROZOWSKY, JOEL Sammeth, Michael SBONER, ANDREA SCHULZ, MARCEL H SEARLE, STEVEN M J SOLORZANO, NARYTTZA DIAZ SOLOVYEV, VICTOR STANKE, MARIO STEIJGER, TAMARA STEVENSON, BRIAN J STOCKINGER, HEINZ VALSESIA, ARMAND WEESE, DAVID WHITE, SIMON WOLD, BARBARA J WU, JIE WU, THOMAS D ZELLER, GEORG ZERBINO, DANIEL ZHANG, MICHAEL Q HUBBARD, TIM J GUIGÓ, RODERIC HARROW, JENNIFER BERTONE, PAUL ; Assessment of transcript reconstruction methods for RNA-seq. Nature Methods , v. 10, p. 1177-1184, 2013.
2013 CNOP, M. ; ABDULKARIM, B. ; BOTTU, G. ; CUNHA, D. A. ; IGOILLO-ESTEVE, M. ; MASINI, M. ; TURATSINZE, J.-V. ; GRIEBEL, T. ; VILLATE, O. ; SANTIN, I. ; BUGLIANI, M. ; LADRIERE, L. ; MARSELLI, L. ; MCCARTHY, M. I. ; MARCHETTI, P. ; SAMMETH, M. ; EIZIRIK, D. L. . RNA-sequencing identifies dysregulation of the human pancreatic islet transcriptome by the saturated fatty acid palmitate. Diabetes (New York, N.Y.) , v. 00, p. 00, 2013.
2012 MARCO-SOLA, SANTIAGO ; SAMMETH, MICHAEL ; GUIGÓ, RODERIC ; RIBECA, PAOLO . The GEM mapper: fast, accurate and versatile alignment by filtration. Nature Methods , v. 9, p. 1185-1188, 2012.
2012 GRIEBEL, T. ; ZACHER, B. ; RIBECA, P. ; RAINERI, E. ; LACROIX, V. ; GUIGO, R. ; SAMMETH, M. . Modelling and simulating generic RNA-Seq experiments with the flux simulator. Nucleic Acids Research (Online) , v. 40, p. 10073-10083, 2012.
2012 DJEBALI, SARAH DAVIS, CARRIE A. MERKEL, ANGELIKA DOBIN, ALEX LASSMANN, TIMO MORTAZAVI, ALI TANZER, ANDREA LAGARDE, JULIEN LIN, WEI SCHLESINGER, FELIX XUE, CHENGHAI MARINOV, GEORGI K. KHATUN, JAINAB WILLIAMS, BRIAN A. ZALESKI, CHRIS ROZOWSKY, JOEL RÖDER, MAIK KOKOCINSKI, FELIX ABDELHAMID, REHAB F. ALIOTO, TYLER ANTOSHECHKIN, IGOR BAER, MICHAEL T. BAR, NADAV S. BATUT, PHILIPPE BELL, KIMBERLY , et al. BELL, IAN CHAKRABORTTY, SUDIPTO CHEN, XIAN CHRAST, JACQUELINE CURADO, JOAO DERRIEN, THOMAS DRENKOW, JORG DUMAIS, ERICA DUMAIS, JACQUELINE DUTTAGUPTA, RADHA FALCONNET, EMILIE FASTUCA, MEAGAN FEJES-TOTH, KATA FERREIRA, PEDRO FOISSAC, SYLVAIN FULLWOOD, MELISSA J. GAO, HUI GONZALEZ, DAVID GORDON, ASSAF GUNAWARDENA, HARSHA HOWALD, CEDRIC JHA, SONALI JOHNSON, RORY KAPRANOV, PHILIPP KING, BRANDON KINGSWOOD, COLIN LUO, OSCAR J. PARK, EDDIE PERSAUD, KIMBERLY PREALL, JONATHAN B. RIBECA, PAOLO RISK, BRIAN ROBYR, DANIEL SAMMETH, MICHAEL SCHAFFER, LORIAN SEE, LEI-HOON SHAHAB, ATIF SKANCKE, JORGEN SUZUKI, ANA MARIA TAKAHASHI, HAZUKI TILGNER, HAGEN TROUT, DIANE WALTERS, NATHALIE WANG, HUAIEN WROBEL, JOHN YU, YANBAO RUAN, XIAOAN HAYASHIZAKI, YOSHIHIDE HARROW, JENNIFER GERSTEIN, MARK HUBBARD, TIM REYMOND, ALEXANDRE ANTONARAKIS, STYLIANOS E. HANNON, GREGORY GIDDINGS, MORGAN C. RUAN, YIJUN WOLD, BARBARA CARNINCI, PIERO GUIGÓ, RODERIC GINGERAS, THOMAS R. ; Landscape of transcription in human cells. Nature (London) , v. 489, p. 101-108, 2012.
2012 EIZIRIK, DÉCIO L. ; SAMMETH, MICHAEL ; BOUCKENOOGHE, THOMAS ; BOTTU, GUY ; SISINO, GIORGIA ; IGOILLO-ESTEVE, MARIANA ; ORTIS, FERNANDA ; SANTIN, IZORTZE ; COLLI, MAIKEL L. ; BARTHSON, JENNY ; BOUWENS, LUC ; HUGHES, LINDA ; GREGORY, LORNA ; LUNTER, GERTON ; MARSELLI, LORELLA ; MARCHETTI, PIERO ; MCCARTHY, MARK I. ; CNOP, MIRIAM . The Human Pancreatic Islet Transcriptome: Expression of Candidate Genes for Type 1 Diabetes and the Impact of Pro-Inflammatory Cytokines. PLOS Genetics (Online) , v. 8, p. e1002552, 2012.
2012 GONZALEZ-PORTA, M. ; CALVO, M. ; SAMMETH, M. ; GUIGO, R. . Estimation of alternative splicing variability in human populations. Genome Research , v. 22, p. 528-538, 2012.
2012 DUNHAM, IAN KUNDAJE, ANSHUL ALDRED, SHELLEY F. COLLINS, PATRICK J. DAVIS, CARRIE A. DOYLE, FRANCIS EPSTEIN, CHARLES B. FRIETZE, SETH HARROW, JENNIFER KAUL, RAJINDER KHATUN, JAINAB LAJOIE, BRYAN R. LANDT, STEPHEN G. LEE, BUM-KYU PAULI, FLORENCIA ROSENBLOOM, KATE R. SABO, PETER SAFI, ALEXIAS SANYAL, AMARTYA SHORESH, NOAM SIMON, JEREMY M. SONG, LINGYUN TRINKLEIN, NATHAN D. ALTSHULER, ROBERT C. BIRNEY, EWAN , et al. BROWN, JAMES B. CHENG, CHAO DJEBALI, SARAH DONG, XIANJUN DUNHAM, IAN ERNST, JASON FUREY, TERRENCE S. GERSTEIN, MARK GIARDINE, BELINDA GREVEN, MELISSA HARDISON, ROSS C. HARRIS, ROBERT S. HERRERO, JAVIER HOFFMAN, MICHAEL M. IYER, SOWMYA KELLIS, MANOLIS KHATUN, JAINAB KHERADPOUR, POUYA KUNDAJE, ANSHUL LASSMANN, TIMO LI, QUNHUA LIN, XINYING MARINOV, GEORGI K. MERKEL, ANGELIKA MORTAZAVI, ALI PARKER, STEPHEN C. J. REDDY, TIMOTHY E. ROZOWSKY, JOEL SCHLESINGER, FELIX THURMAN, ROBERT E. WANG, JIE WARD, LUCAS D. WHITFIELD, TROY W. WILDER, STEVEN P. WU, WEISHENG XI, HUALIN S. YIP, KEVIN Y. ZHUANG, JIALI BERNSTEIN, BRADLEY E. BIRNEY, EWAN DUNHAM, IAN GREEN, ERIC D. GUNTER, CHRIS SNYDER, MICHAEL PAZIN, MICHAEL J. LOWDON, REBECCA F. DILLON, LAURA A. L. ADAMS, LESLIE B. KELLY, CAROLINE J. ZHANG, JULIA WEXLER, JUDITH R. GREEN, ERIC D. GOOD, PETER J. FEINGOLD, ELISE A. BERNSTEIN, BRADLEY E. BIRNEY, EWAN CRAWFORD, GREGORY E. DEKKER, JOB ELNITSKI, LAURA FARNHAM, PEGGY J. GERSTEIN, MARK GIDDINGS, MORGAN C. GINGERAS, THOMAS R. GREEN, ERIC D. GUIGÓ, RODERIC HARDISON, ROSS C. HUBBARD, TIMOTHY J. KELLIS, MANOLIS KENT, W. JAMES LIEB, JASON D. MARGULIES, ELLIOTT H. MYERS, RICHARD M. SNYDER, MICHAEL STAMATOYANNOPOULOS, JOHN A. TENENBAUM, SCOTT A. WENG, ZHIPING WHITE, KEVIN P. WOLD, BARBARA KHATUN, JAINAB YU, YANBAO WROBEL, JOHN RISK, BRIAN A. GUNAWARDENA, HARSHA P. KUIPER, HEATHER C. MAIER, CHRISTOPHER W. XIE, LING CHEN, XIAN GIDDINGS, MORGAN C. BERNSTEIN, BRADLEY E. EPSTEIN, CHARLES B. SHORESH, NOAM ERNST, JASON KHERADPOUR, POUYA MIKKELSEN, TARJEI S. GILLESPIE, SHAWN GOREN, ALON RAM, OREN ZHANG, XIAOLAN WANG, LI ISSNER, ROBBYN COYNE, MICHAEL J. DURHAM, TIMOTHY KU, MANCHING TRUONG, THANH WARD, LUCAS D. ALTSHULER, ROBERT C. EATON, MATTHEW L. KELLIS, MANOLIS DJEBALI, SARAH DAVIS, CARRIE A. MERKEL, ANGELIKA DOBIN, ALEX LASSMANN, TIMO MORTAZAVI, ALI TANZER, ANDREA LAGARDE, JULIEN LIN, WEI SCHLESINGER, FELIX XUE, CHENGHAI MARINOV, GEORGI K. KHATUN, JAINAB WILLIAMS, BRIAN A. ZALESKI, CHRIS ROZOWSKY, JOEL RÖDER, MAIK KOKOCINSKI, FELIX ABDELHAMID, REHAB F. ALIOTO, TYLER ANTOSHECHKIN, IGOR BAER, MICHAEL T. BATUT, PHILIPPE BELL, IAN BELL, KIMBERLY CHAKRABORTTY, SUDIPTO CHEN, XIAN CHRAST, JACQUELINE CURADO, JOAO DERRIEN, THOMAS DRENKOW, JORG DUMAIS, ERICA DUMAIS, JACKIE DUTTAGUPTA, RADHA FASTUCA, MEGAN FEJES-TOTH, KATA FERREIRA, PEDRO FOISSAC, SYLVAIN FULLWOOD, MELISSA J. GAO, HUI GONZALEZ, DAVID GORDON, ASSAF GUNAWARDENA, HARSHA P. HOWALD, CÉDRIC JHA, SONALI JOHNSON, RORY KAPRANOV, PHILIPP KING, BRANDON KINGSWOOD, COLIN LI, GUOLIANG LUO, OSCAR J. PARK, EDDIE PREALL, JONATHAN B. PRESAUD, KIMBERLY RIBECA, PAOLO RISK, BRIAN A. ROBYR, DANIEL RUAN, XIAOAN SAMMETH, MICHAEL SANDHU, KULJEET SINGH SCHAEFFER, LORAIN SEE, LEI-HOON SHAHAB, ATIF SKANCKE, JORGEN SUZUKI, ANA MARIA TAKAHASHI, HAZUKI TILGNER, HAGEN TROUT, DIANE WALTERS, NATHALIE WANG, HUAIEN WROBEL, JOHN YU, YANBAO HAYASHIZAKI, YOSHIHIDE HARROW, JENNIFER GERSTEIN, MARK HUBBARD, TIMOTHY J. REYMOND, ALEXANDRE ANTONARAKIS, STYLIANOS E. HANNON, GREGORY J. GIDDINGS, MORGAN C. RUAN, YIJUN WOLD, BARBARA CARNINCI, PIERO GUIGÓ, RODERIC GINGERAS, THOMAS R. ROSENBLOOM, KATE R. SLOAN, CRICKET A. LEARNED, KATRINA MALLADI, VENKAT S. WONG, MATTHEW C. BARBER, GALT P. CLINE, MELISSA S. DRESZER, TIMOTHY R. HEITNER, STEVEN G. KAROLCHIK, DONNA KENT, W. JAMES KIRKUP, VANESSA M. MEYER, LAURENCE R. LONG, JEFFREY C. MADDREN, MORGAN RANEY, BRIAN J. FUREY, TERRENCE S. SONG, LINGYUN GRASFEDER, LINDA L. GIRESI, PAUL G. LEE, BUM-KYU BATTENHOUSE, ANNA SHEFFIELD, NATHAN C. SIMON, JEREMY M. SHOWERS, KIMBERLY A. SAFI, ALEXIAS LONDON, DARIN BHINGE, AKSHAY A. SHESTAK, CHRISTOPHER SCHANER, MATTHEW R. KI KIM, SEUL ZHANG, ZHUZHU Z. MIECZKOWSKI, PIOTR A. MIECZKOWSKA, JOANNA O. LIU, ZHENG MCDANIELL, RYAN M. NI, YUNYUN RASHID, NAIM U. KIM, MIN JAE ADAR, SHEERA ZHANG, ZHANCHENG WANG, TIANYUAN WINTER, DEBORAH KEEFE, DAMIAN BIRNEY, EWAN IYER, VISHWANATH R. LIEB, JASON D. CRAWFORD, GREGORY E. LI, GUOLIANG SANDHU, KULJEET SINGH ZHENG, MEIZHEN WANG, PING LUO, OSCAR J. SHAHAB, ATIF FULLWOOD, MELISSA J. RUAN, XIAOAN RUAN, YIJUN MYERS, RICHARD M. PAULI, FLORENCIA WILLIAMS, BRIAN A. GERTZ, JASON MARINOV, GEORGI K. REDDY, TIMOTHY E. VIELMETTER, JOST PARTRIDGE, E. TROUT, DIANE VARLEY, KATHERINE E. GASPER, CLARKE BANSAL, ANITA PEPKE, SHIRLEY JAIN, PRETI AMRHEIN, HENRY BOWLING, KEVIN M. ANAYA, MICHAEL CROSS, MARIE K. KING, BRANDON MURATET, MICHAEL A. ANTOSHECHKIN, IGOR NEWBERRY, KIMBERLY M. MCCUE, KENNETH NESMITH, AMY S. FISHER-AYLOR, KATHERINE I. PUSEY, BARBARA DESALVO, GILBERTO PARKER, STEPHANIE L. BALASUBRAMANIAN, SREERAM DAVIS, NICHOLAS S. MEADOWS, SARAH K. EGGLESTON, TRACY GUNTER, CHRIS NEWBERRY, J. SCOTT LEVY, SHAWN E. ABSHER, DEVIN M. MORTAZAVI, ALI WONG, WING H. WOLD, BARBARA BLOW, MATTHEW J. VISEL, AXEL PENNACHIO, LEN A. ELNITSKI, LAURA MARGULIES, ELLIOTT H. PARKER, STEPHEN C. J. PETRYKOWSKA, HANNA M. ABYZOV, ALEXEJ AKEN, BRONWEN BARRELL, DANIEL BARSON, GEMMA BERRY, ANDREW BIGNELL, ALEXANDRA BOYCHENKO, VERONIKA BUSSOTTI, GIOVANNI CHRAST, JACQUELINE DAVIDSON, CLAIRE DERRIEN, THOMAS DESPACIO-REYES, GLORIA DIEKHANS, MARK EZKURDIA, IAKES FRANKISH, ADAM GILBERT, JAMES GONZALEZ, JOSE MANUEL GRIFFITHS, ED HARTE, RACHEL HENDRIX, DAVID A. HOWALD, CÉDRIC HUNT, TOBY JUNGREIS, IRWIN KAY, MIKE KHURANA, EKTA KOKOCINSKI, FELIX LENG, JING LIN, MICHAEL F. LOVELAND, JANE LU, ZHI MANTHRAVADI, DEEPA MARIOTTI, MARCO MUDGE, JONATHAN MUKHERJEE, GAURAB NOTREDAME, CEDRIC PEI, BAIKANG RODRIGUEZ, JOSE MANUEL SAUNDERS, GARY SBONER, ANDREA SEARLE, STEPHEN SISU, CRISTINA SNOW, CATHERINE STEWARD, CHARLIE TANZER, ANDREA TAPANARI, ELECTRA TRESS, MICHAEL L. VAN BAREN, MARIJKE J. WALTERS, NATHALIE WASHIETL, STEFAN WILMING, LAURENS ZADISSA, AMONIDA ZHANG, ZHENGDONG BRENT, MICHAEL HAUSSLER, DAVID KELLIS, MANOLIS VALENCIA, ALFONSO GERSTEIN, MARK REYMOND, ALEXANDRE GUIGÓ, RODERIC HARROW, JENNIFER HUBBARD, TIMOTHY J. LANDT, STEPHEN G. FRIETZE, SETH ABYZOV, ALEXEJ ADDLEMAN, NICK ALEXANDER, ROGER P. AUERBACH, RAYMOND K. BALASUBRAMANIAN, SUGANTHI BETTINGER, KEITH BHARDWAJ, NITIN BOYLE, ALAN P. CAO, ALINA R. CAYTING, PHILIP CHAROS, ALEXANDRA CHENG, YONG CHENG, CHAO EASTMAN, CATHARINE EUSKIRCHEN, GHIA FLEMING, JOSEPH D. GRUBERT, FABIAN HABEGGER, LUKAS HARIHARAN, MANOJ HARMANCI, ARIF IYENGAR, SUSHMA JIN, VICTOR X. KARCZEWSKI, KONRAD J. KASOWSKI, MAYA LACROUTE, PHIL LAM, HUGO LAMARRE-VINCENT, NATHAN LENG, JING LIAN, JIN LINDAHL-ALLEN, MARIANNE MIN, RENQIANG MIOTTO, BENOIT MONAHAN, HANNAH MOQTADERI, ZARMIK MU, XINMENG J. O'GEEN, HENRIETTE OUYANG, ZHENGQING PATACSIL, DORRELYN PEI, BAIKANG RAHA, DEBASISH RAMIREZ, LUCIA REED, BRIAN ROZOWSKY, JOEL SBONER, ANDREA SHI, MINYI SISU, CRISTINA SLIFER, TERI WITT, HEATHER WU, LINFENG XU, XIAOQIN YAN, KOON-KIU YANG, XINQIONG YIP, KEVIN Y. ZHANG, ZHENGDONG STRUHL, KEVIN WEISSMAN, SHERMAN M. GERSTEIN, MARK FARNHAM, PEGGY J. SNYDER, MICHAEL TENENBAUM, SCOTT A. PENALVA, LUIZ O. DOYLE, FRANCIS KARMAKAR, SUBHRADIP LANDT, STEPHEN G. BHANVADIA, RAJ R. CHOUDHURY, ALINA DOMANUS, MARC MA, LIJIA MORAN, JENNIFER PATACSIL, DORRELYN SLIFER, TERI VICTORSEN, ALEC YANG, XINQIONG SNYDER, MICHAEL WHITE, KEVIN P. AUER, THOMAS CENTANIN, LAZARO EICHENLAUB, MICHAEL GRUHL, FRANZISKA HEERMANN, STEPHAN HOECKENDORF, BURKHARD INOUE, DAIGO KELLNER, TANJA KIRCHMAIER, STEPHAN MUELLER, CLAUDIA REINHARDT, ROBERT SCHERTEL, LEA SCHNEIDER, STEPHANIE SINN, REBECCA WITTBRODT, BEATE WITTBRODT, JOCHEN WENG, ZHIPING WHITFIELD, TROY W. WANG, JIE COLLINS, PATRICK J. ALDRED, SHELLEY F. TRINKLEIN, NATHAN D. PARTRIDGE, E. CHRISTOPHER MYERS, RICHARD M. DEKKER, JOB JAIN, GAURAV LAJOIE, BRYAN R. SANYAL, AMARTYA BALASUNDARAM, GAYATHRI BATES, DANIEL L. BYRON, RACHEL CANFIELD, THERESA K. DIEGEL, MORGAN J. DUNN, DOUGLAS EBERSOL, ABIGAIL K. FRUM, TRISTAN GARG, KAVITA GIST, ERICA HANSEN, R. SCOTT BOATMAN, LISA HAUGEN, ERIC HUMBERT, RICHARD JAIN, GAURAV JOHNSON, AUDRA K. JOHNSON, ERICKA M. KUTYAVIN, TATTYANA V. LAJOIE, BRYAN R. LEE, KRISTEN LOTAKIS, DIMITRA MAURANO, MATTHEW T. NEPH, SHANE J. NERI, FIEDENCIO V. NGUYEN, ERIC D. QU, HONGZHU REYNOLDS, ALEX P. ROACH, VAUGHN RYNES, ERIC SABO, PETER SANCHEZ, MINERVA E. SANDSTROM, RICHARD S. SANYAL, AMARTYA SHAFER, ANTHONY O. STERGACHIS, ANDREW B. THOMAS, SEAN THURMAN, ROBERT E. VERNOT, BENJAMIN VIERSTRA, JEFF VONG, SHINNY WANG, HAO WEAVER, MOLLY A. YAN, YONGQI ZHANG, MIAOHUA AKEY, JOSHUA M. BENDER, MICHAEL DORSCHNER, MICHAEL O. GROUDINE, MARK MACCOSS, MICHAEL J. NAVAS, PATRICK STAMATOYANNOPOULOS, GEORGE KAUL, RAJINDER DEKKER, JOB STAMATOYANNOPOULOS, JOHN A. DUNHAM, IAN BEAL, KATHRYN BRAZMA, ALVIS FLICEK, PAUL HERRERO, JAVIER JOHNSON, NATHAN KEEFE, DAMIAN LUKK, MARGUS LUSCOMBE, NICHOLAS M. SOBRAL, DANIEL VAQUERIZAS, JUAN M. WILDER, STEVEN P. BATZOGLOU, SERAFIM SIDOW, AREND HUSSAMI, NADINE KYRIAZOPOULOU-PANAGIOTOPOULOU, SOFIA LIBBRECHT, MAX W. SCHAUB, MARC A. KUNDAJE, ANSHUL HARDISON, ROSS C. MILLER, WEBB GIARDINE, BELINDA HARRIS, ROBERT S. WU, WEISHENG BICKEL, PETER J. BANFAI, BALAZS BOLEY, NATHAN P. BROWN, JAMES B. HUANG, HAIYAN LI, QUNHUA LI, JINGYI JESSICA NOBLE, WILLIAM STAFFORD BILMES, JEFFREY A. BUSKE, ORION J. HOFFMAN, MICHAEL M. SAHU, AVINASH D. KHARCHENKO, PETER V. PARK, PETER J. BAKER, DANNON TAYLOR, JAMES WENG, ZHIPING IYER, SOWMYA DONG, XIANJUN GREVEN, MELISSA LIN, XINYING WANG, JIE XI, HUALIN S. ZHUANG, JIALI GERSTEIN, MARK ALEXANDER, ROGER P. BALASUBRAMANIAN, SUGANTHI CHENG, CHAO HARMANCI, ARIF LOCHOVSKY, LUCAS MIN, RENQIANG MU, XINMENG J. ROZOWSKY, JOEL YAN, KOON-KIU YIP, KEVIN Y. BIRNEY, EWAN ; An integrated encyclopedia of DNA elements in the human genome. Nature (London) , v. 489, p. 57-74, 2012.
2012 MUNDRY, MARVIN ; BORNBERG-BAUER, ERICH ; SAMMETH, MICHAEL ; FEULNER, PHILINE G. D. . Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach. Plos One , v. 7, p. e31410, 2012.
2010 MONTGOMERY, STEPHEN B. ; SAMMETH, MICHA ; GUTIERREZ-ARCELUS, MARIA ; LACH, RADOSLAW P. ; INGLE, CATHERINE ; NISBETT, JAMES ; GUIGO, RODERIC ; DERMITZAKIS, EMMANOUIL T. . Transcriptome genetics using second generation sequencing in a Caucasian population. Nature (London) , v. 464, p. 773-777, 2010.
2010 HORNER, D. S. ; PAVESI, G. ; CASTRIGNANO, T. ; DE MEO, P. D. ; LIUNI, S. ; SAMMETH, M. ; PICARDI, E. ; PESOLE, G. . Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. Briefings in Bioinformatics , v. 11, p. 181-197, 2010.
2009 SAMMETH, MICHAEL . Complete Alternative Splicing Events Are Bubbles in Splicing Graphs. Journal of Computational Biology , v. 16, p. 1117-1140, 2009.
2009 TILGNER, HAGEN ; NIKOLAOU, CHRISTOFOROS ; ALTHAMMER, SONJA ; SAMMETH, MICHAEL ; BEATO, MIGUEL ; VALCÁRCEL, JUAN ; GUIGÓ, RODERIC . Nucleosome positioning as a determinant of exon recognition. Nature Structural & Molecular Biology (Online) , v. 16, p. 996-1001, 2009.
2008 Sammeth, Michael ; FOISSAC, SYLVAIN ; GUIGÓ, RODERIC . A General Definition and Nomenclature for Alternative Splicing Events. PLOS Computational Biology (Online) , v. 4, p. e1000147, 2008.
2007 MELLMANN, ALEXANDER ; WENIGER, THOMAS ; BERSSENBRÜGGE, CHRISTOPH ; ROTHGÄNGER, JÖRG ; SAMMETH, MICHAEL ; STOYE, JENS ; HARMSEN, DAG . Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms. BMC Microbiology (Online) , v. 7, p. 98, 2007.
2007 FOISSAC, S. ; SAMMETH, M. . ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. Nucleic Acids Research (Online) , v. 35, p. W297-W299, 2007.
2006 SAMMETH, MICHAEL ; STOYE, JENS . Comparing Tandem Repeats with Duplications and Excisions of Variable Degree. IEEE/ACM Transactions on Computational Biology and Bioinformatics (Print) , v. 3, p. 395-407, 2006.
2006 SAMMETH, MICHAEL ; HERINGA, JAAP . Global multiple-sequence alignment with repeats. Proteins (Print) , v. 64, p. 263-274, 2006.
2006 SAMMETH, M. ; GRIEBEL, T. ; TILLE, F. ; STOYE, J. . Panta rhei (QAlign2): an open graphical environment for sequence analysis. Bioinformatics (Oxford. Print) , v. 22, p. 889-890, 2006.
2003 HARMSEN, DAG ; DOSTAL, STEFAN ; ROTH, ANDREAS ; NIEMANN, STEFAN ; ROTHGÄNGER, JÖRG ; SAMMETH, MICHAEL ; ALBERT, JÜRGEN ; FROSCH, MATTHIAS ; RICHTER, ELVIRA . RIDOM: comprehensive and public sequence database for identification of Mycobacterium species. BMC Infectious Diseases (Online) , v. 3, p. 26, 2003.
2003 SAMMETH, MICHAEL ; MORGENSTERN, B. ; STOYE, J. . Divide-and-conquer multiple alignment with segment-based constraints. Bioinformatics (Oxford. Print) , v. 19, p. ii189-ii195, 2003.
2003 SAMMETH, M. ; ROTHGANGER, J. ; ESSER, W. ; ALBERT, J. ; STOYE, J. ; HARMSEN, D. . QAlign: quality-based multiple alignments with dynamic phylogenetic analysis. Bioinformatics (Oxford. Print) , v. 19, p. 1592-1593, 2003.
OTI, MARTIN ; SAMMETH, M. . Comparative Genomics in Human. Comparative Genomics. 0ed.New York: Springer, 2016, v. , p. 0-.
OTI, MARTIN ; PANE, A. ; SAMMETH, MICHAEL . Comparative Genomics in Drosophila melanogaster. Comparative Genomics. 1ed.New York: Springer, 2016, v. , p. 1-.
FOISSAC, SYLVAIN ; Sammeth, Michael . Analysis of Alternative Splicing Events in Custom Gene Datasets by AStalavista. In: E Picardi. (Org.). Methods in Molecular Biology. 1ed.: Springer New York, 2015, v. 1269, p. 379-392.
RIBECA, PAOLO ; Lacroix, Vincent ; Sammeth, Michael ; GUIGÓ, RODERIC . Analysis of RNA Transcripts by High-Throughput RNA Sequencing. In: Stefan Stamm, Christopher W. J. Smith, Reinhard Lührmann. (Org.). Alternative pre-mRNA Splicing: Theory and Protocols. 1ed.Weinheim: Wiley-VCH Verlag GmbH & Co KGaA, 2012, v. , p. 544-554.
LACROIX, V. ; SAMMETH, MICHAEL ; GUIGÓ, RODERIC ; BERGERON, A. . Exact Transcriptome Reconstruction from Short Sequence Reads. WABI 2008. 1ed.Berlin, Heidelberg: Springer, 2008, v. 5251, p. 50-63.
Sammeth, Michael ; Valiente, Gabriel ; GUIGÓ, RODERIC . Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. In: Research in Computational Molecular Biology. (Org.). Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. 1ed.Heidelberg, Berlin: Springer, 2008, v. 4955, p. 372-395.
Sammeth, Michael ; WENIGER, THOMAS ; HARMSEN, DAG ; STOYE, JENS . Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). In: WABI 2005. (Org.). Lecture Notes in Computer Science. 1ed.Berlin, Heidelberg: Springer Berlin Heidelberg, 2005, v. 3692, p. 276-290.
SAMMETH, M. . Putting a Pretty Face on Multiple Sequence Alignment. The Scientist, 06 out. 2003.
SAMMETH, M. . Transcriptômica. 2015. (Apresentação de Trabalho/Conferência ou palestra).
SAMMETH, M. . Graphs, Genes and Geometry. 2015. (Apresentação de Trabalho/Seminário).
SAMMETH, M. . Splicing Graphs -- DAGs on Genes. 2015. (Apresentação de Trabalho/Seminário).
SAMMETH, M. . Human transcriptional variation across individuals and tissues. 2014. (Apresentação de Trabalho/Seminário).
SAMMETH, M. . Human Transcriptome Variations. 2014. (Apresentação de Trabalho/Seminário).
SAMMETH, M. . Individual- and tissue-specific variations of the human transcriptome. 2014. (Apresentação de Trabalho/Conferência ou palestra).
SAMMETH, M. . Ribonucleic ACID, a heterogenic BASE of life. 2014. (Apresentação de Trabalho/Seminário).
SAMMETH, M. . Bioinformática e genómica--o que esta rolando uma década depois da gente completar o genoma humano. 2014. (Apresentação de Trabalho/Seminário).
Sammeth, Michael . Personal transcription and splicing throughout human populations. 2013. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . Small changes in the big picture: genetic fine-tuning in transcriptome variation across human populations. 2013. (Apresentação de Trabalho/Seminário).
Sammeth, Michael . Transcription and splicing in personalized transcriptomes of lymphoblastoid cell lines. 2013. (Apresentação de Trabalho/Seminário).
FERREIRA, P. ; MONLONG, J. ; PORTA, M. G. ; BARANN, M. ; LAPPALAIANEN, T. ; WIELAND, T. ; FRIEDLAENDER, M. ; GOUIN, A. ; RIVAS, MA. ; ROSENSTIEL, P. ; DERMITZAKIS, E. T. ; GUIGO, R. ; Sammeth, Michael . Small changes in the big picture: genetic fine-tuning in transcriptome variation across human populations. 2013. (Apresentação de Trabalho/Congresso).
Sammeth, Michael . RNA-Seq at a Next-Generation Sequencing Center. 2012. (Apresentação de Trabalho/Seminário).
Sammeth, Michael . RNA-Seq at a Next-Generation Sequencing Center. 2012. (Apresentação de Trabalho/Seminário).
Sammeth, Michael . The Flux Project. 2011. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . RNA-Seq and Transcript Quantification. 2011. (Apresentação de Trabalho/Congresso).
Sammeth, Michael . Simulation of Digital Northerns and RNA-Seq Samba. 2010. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . RNA-Seq and Transcript Quantification. 2010. (Apresentação de Trabalho/Simpósio).
Sammeth, Michael . Transcriptome genetics using second generation sequencing in a Caucasian population. 2010. (Apresentação de Trabalho/Congresso).
Sammeth, Michael . RECONSTRUCTION OF ALTERNATIVE SPLICE VARIANTS AND ASSOCIATED ABUNDANCES FROM SHORT SEQUENCE READS. 2009. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . The Computational Exploration of (Alternative) Splicing Mechanisms. 2009. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael ; Lacroix, Vincent ; RIBECA, PAOLO ; BERGERON, A. ; GUIGO, RODERIC . Reconstruction of Alternative Splice Variants and Associated Abundances from Short Sequence Reads. 2009. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . The Flux Project. 2009. (Apresentação de Trabalho/Congresso).
Sammeth, Michael . RNA-Seq and Transcript Quantification. 2009. (Apresentação de Trabalho/Seminário).
Sammeth, Michael . The Flux Project. 2009. (Apresentação de Trabalho/Seminário).
Sammeth, Michael ; Valiente, Gabriel ; GUIGO, RODERIC . Bubbles, blobs and galls: Alternative Splicing Events of Dimension k in Splicing Graphs. 2008. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . AStalavista - Alternative Splicing Analyzes. 2008. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . AStalavista. 2007. (Apresentação de Trabalho/Seminário).
Sammeth, Michael . AStalavista - Alternative Splicing Analyzes. 2007. (Apresentação de Trabalho/Comunicação).
Sammeth, Michael . The Alternative Splicing Landscape of Mammals. 2007. (Apresentação de Trabalho/Seminário).
Sammeth, Michael ; FOISSAC, SYLVAIN . conferencia internacional da biologica computacional europea (ECCB). 2006. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael ; FOISSAC, SYLVAIN ; GUIGO, RODERIC . conferencia nacional da bioinformatica alema (GCB). 2006. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael ; FOISSAC, SYLVAIN ; GUIGO, RODERIC . Comparison of Alternative Splicing Structures in Eukaryotes. 2006. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael ; FOISSAC, SYLVAIN ; GUIGO, RODERIC . conferencia nacional da bioinformatica espanhola (JdB). 2006. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. 2006. (Apresentação de Trabalho/Seminário).
Sammeth, Michael . Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. 2006. (Apresentação de Trabalho/Seminário).
Sammeth, Michael . AStalavista - Alternative Splicing Analyzes. 2006. (Apresentação de Trabalho/Seminário).
Sammeth, Michael ; WENIGER, T. ; HARMSEN, DAG ; STOYE, JENS . Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). 2005. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . Aligning intron-exon structures of alternatively spliced genes. 2005. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . ESDI Aligner. 2005. (Apresentação de Trabalho/Seminário).
Sammeth, Michael ; MORGENSTERN, B. ; STOYE, JENS . Divide-and-Conquer Multiple Alignment. 2003. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael ; MORGENSTERN, B. ; STOYE, JENS . Divide-and-Conquer Multiple Alignment. 2003. (Apresentação de Trabalho/Conferência ou palestra).
Sammeth, Michael . Integrated Multiple Alignment. 2003. (Apresentação de Trabalho/Seminário).
Sammeth, Michael ; ROTHGANGER, J. ; ESSER, W. ; ALBERT, J. ; HARMSEN, D. . QAlign: Quality-based multiple alignments. 2002. (Apresentação de Trabalho/Congresso).
Sammeth, Michael . Quality-based Multiple Alignment. 2002. (Apresentação de Trabalho/Seminário).

Outras produções

Sammeth, Michael . RIDOM GmbH. 2002.

GRIEBEL, T. ; ZACHER, B. ; RIBECA, P. ; RAINERI, E. ; Lacroix, Vincent ; GUIGO, RODERIC ; Sammeth, Michael . Flux Simulator. 2012.

SAMMETH, M. . Flux Simulator. 2012.

Sammeth, Michael . Flux Capacitor. 2010.

SAMMETH, M. . Flux Capacitor. 2010.

Sammeth, Michael ; FOISSAC, SYLVAIN ; GUIGO, RODERIC . AStalavista. 2007.

SAMMETH, M. . AStalavista. 2007.

Sammeth, Michael ; GRIEBEL, T. ; TILLE, F. ; STOYE, JENS . QAlign 2 - Panta rhe. 2006.

Sammeth, Michael ; STOYE, JENS . ESDI Aligner. 2005.

Sammeth, Michael ; HERINGA, JAAP . RAlign. 2004.

Sammeth, Michael ; ROTHGÄNGER, JÖRG ; ESSER, W. ; ALBERT, JÜRGEN ; STOYE, JENS ; HARMSEN, DAG . QAlign. 2002.

Sammeth, Michael . Multiple Alignment Algorithms. 2005. (Curso de curta duração ministrado/Extensão).

Sammeth, Michael ; STOYE, JENS . Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). 2005. (Relatório de pesquisa).

Sammeth, Michael . Advanced Java Programming. 2004. (Curso de curta duração ministrado/Especialização).

Sammeth, Michael . Algorithms and Datastructures. 2003. (Curso de curta duração ministrado/Extensão).

Sammeth, Michael . Deep Java. 2003. (Curso de curta duração ministrado/Especialização).

SAMMETH, MICHAEL ; FOISSAC, SYLVAIN ; Rademacher, K ; GRIEBEL, T. ; GUIGÓ, RODERIC . A General Definition and Nomenclature for Alternative Splicing Events. 2008. Vídeo.

SAMMETH, MICHAEL ; RIBECA, PAOLO ; LACROIX, V. ; GUIGÓ, RODERIC . Reconstruction of Alternative Splice Variants and Associated Abundances from Short Sequence Reads. 2008. Vídeo.

Projetos de pesquisa

2015 - Atual

Utilização de métodos genômicos e computacionais para o estudo funcional de genes cruciais ao desenvolvimento do besouro Tribolium castaneum, Situação: Em andamento; Natureza: Pesquisa. , Alunos envolvidos: Graduação: (3) / Mestrado acadêmico: (5) / Doutorado: (10) . , Integrantes: Marc Andre Michael Thorsten Sammeth - Integrante / Thiago Motta Venancio - Coordenador / Helena Maria Marcolla Araujo - Integrante / Gustavo Lazzaro Rezende - Integrante / Attilio Pane - Integrante / Rodrigo Nunes da Fonseca - Integrante., Financiador(es): Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do RJ - Auxílio financeiro.
2014 - Atual

Pensa Rio, Descrição: Electrophysiological, genetic, biochemical and histological characterization of induced pluripotent stem cells obtained from patients with neural, cardiac and renal diseases: Investigating the cellular and molecular changes in the pathway from pluripotency to ?in vitro? differentiation to decipher physiopathological mechanisms. , Situação: Em andamento; Natureza: Pesquisa. , Integrantes: Marc Andre Michael Thorsten Sammeth - Coordenador / Antonio Carlos Campos de Carvalho - Integrante / Adalberto Vieyra - Integrante / Adriana Bastos Carvalho - Integrante / Ana Paula Cabral de Araujo Lima Smeltzer - Integrante / Daniel Kasal - Integrante / Emiliano Horacio Medei - Integrante / Fábio Fortes - Integrante / Fernando Eugênio dos Santos Cruz Filho - Integrante / Glauber Monteiro Dias - Integrante / José Hamilton Matheus Nascimento - Integrante / Marcelo Santiago - Integrante / Regina C. dos Santos Goldenberg - Integrante / Rosalia Mendez Otero - Integrante / Pedro Moreno Pimentel-Coelho - Integrante.
2010 - 2012

Geuvadis, Descrição: The Geuvadis project aims to bring together the knowledge and resources on medical genome sequencing at a European level and allow researchers to develop and test new hypotheses on the genetic basis of disease; to develop standards in sequencing data processing, storage, submission etc. The analysis of samples from the medical field, using RNA and DNA sequencing will allow the project to set up standards in operating procedures and biological/medical interpretation of sequence data in relation to clinical phenotypes. In the RNA-sequencing work package of the Geuvadis project, have combined transcriptome and genome sequencing data by performing mRNA and small RNA sequencing on 465 lymphoblastoid cell line (LCL) samples from 5 populations of the 1000 Genomes Project: the CEPH (CEU), Finns (FIN), British (GBR), Toscani (TSI) and Yoruba (YRI). Of these samples, 423 were part of the 1000 Genomes Phase 1 dataset (Abecasis et al. Nature 2012) with genome sequencing data, and the remaining 42 were imputed from Omni 2.5M SNP array data. The main paper presenting the data set and summarizing the key findings, with a focus on transcriptome variantion and its genetic component (Lappalainen et al. submitted) will be published in spring 2013. Additionally, the consortium will be publishing companion papers on technical variation in RNA-sequencing (?t Hoen et al. submitted), splicing variation (Ferreira et al. submitted), loss-of-function variation (Rivas et al. in preparation), as well as on other aspects of the data.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: Marc Andre Michael Thorsten Sammeth - Integrante / GUIGO, RODERIC - Integrante / DERMITZAKIS, EMMANOUIL T. - Integrante / Xavier Estivill - Coordenador / Stylianos Antonarakis - Integrante / Thomas Meitinger - Integrante / Tim M Storm - Integrante / Arnao Palotie - Integrante / Jean-François Deleuze - Integrante / Hans Lehrach - Integrante / Ralf Sudbrak - Integrante / Ivo Glynne Gut - Integrante / Ann Cristine Syvanen - Integrante / Kerstin Linbald Toh Ulf gyllensten - Integrante / Stefan Schreiber - Integrante / Philip Rosenstiel - Integrante / Joris Veltman - Integrante / Han Brunner - Integrante / Gert Jan Van Ommen - Integrante / Peter Hoen - Integrante / Angel Carracedo - Integrante / Beatriz Sobrino - Integrante / Alvis Brazma - Integrante / Paul Flicek - Integrante / Anne Cambon thomsen - Integrante / Jonathan Mangion - Integrante / David Bentley - Integrante / Ada Hamosh - Integrante.
2010 - Atual

GTEx - Genotype Tissue Expression, Descrição: The Genotype-Tissue Expression project (GTEx) is providing a comprehensive atlas of gene expression and regulation across multiple human tissues. It will enable studies of expression quantitative trait loci (eQTLs), alternative splicing, and the tissue specificity of gene regulatory mechanisms, and aid in the interpretation of Genome-Wide Association Studies (GWAS).. , Situação: Em andamento; Natureza: Pesquisa. , Alunos envolvidos: Doutorado: (2) . , Integrantes: Marc Andre Michael Thorsten Sammeth - Integrante / Roderic Guigo - Integrante / The GTEx Consortium - Coordenador / Emanoulis Dermitzakis - Integrante / Kirstn Adlie - Integrante., Financiador(es): National Institute of Health - Outra.
2007 - 2010

Metodos Algoritmicos y Algebraicos en Bioinformatica, Descrição: Ayudas para potenciar las relaciones científicas internacionales dentro de las áreas geográficas definidas.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: Marc Andre Michael Thorsten Sammeth - Integrante / Gabriel Valiente - Coordenador / Ricardo Alberich Martí - Integrante / Liliana Félix Avila - Integrante / Mercè Llabrés Segura - Integrante / Arnau Mir Torres - Integrante / José Miró Julià - Integrante / Jairo Rocha Cárdenas - Integrante / Francesc Rosselló Llompart - Integrante / Gad Landau - Integrante / Ron Pinter - Integrante / Oleg Rokhlenko - Integrante / Adi Mano - Integrante / Lilia Greenenko - Integrante / Oren Weimann - Integrante / Liat Leventha - Integrante / Nitsan Oz - Integrante / Danny Hermelin - Integrante.
2003 - 2012

Encode, Descrição: The National Human Genome Research Institute (NHGRI) launched a public research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September 2003, to carry out a project to identify all functional elements in the human genome sequence. The project started with two components - a pilot phase and a technology development phase. The pilot phase tested and compared existing methods to rigorously analyze a defined portion of the human genome sequence (See: ENCODE Pilot Project). The conclusions from this pilot project were published in June 2007 in Nature and Genome Research [genome.org]. The findings highlighted the success of the project to identify and characterize functional elements in the human genome. The technology development phase also has been a success with the promotion of several new technologies to generate high throughput data on functional elements. With the success of the initial phases of the ENCODE Project, NHGRI funded new awards in September 2007 to scale the ENCODE Project to a production phase on the entire genome along with additional pilot-scale studies. Like the pilot project, the ENCODE production effort is organized as an open consortium and includes investigators with diverse backgrounds and expertise in the production and analysis of data (See: ENCODE Participants and Projects). This production phase also includes a Data Coordination Center [genome.ucsc.edu] to track, store and display ENCODE data along with a Data Analysis Center to assist in integrated analyses of the data. All data generated by ENCODE participants will be rapidly released into public databases (See: Accessing ENCODE Data) and available through the project's Data Coordination Center.. , Situação: Concluído; Natureza: Pesquisa. , Integrantes: Marc Andre Michael Thorsten Sammeth - Integrante / Bradley Bernstein - Integrante / Thomas Gingeras - Coordenador / Brenton Graveley - Integrante / Richard Myers - Integrante / Bing Ren - Integrante / Michael Snyder - Integrante / John Stamatoyannopoulos - Integrante / Michael Cherry - Integrante / Zhiping Weng - Integrante / Peter Bickel - Integrante / David Gifford - Integrante / Sunduz Keles - Integrante / Robert Klein - Integrante / Jonathan Pritchard - Integrante / Xinshu Xiao - Integrante / Christopher Burge - Integrante / Barak Cohen - Integrante / Peggy Farnham - Integrante / Raymond Hawkins - Integrante / Christina Leslie - Integrante / Jason Lieb - Integrante / Mats Ljungman - Integrante / Tarjei Mikkelsen - Integrante / Jay Shendure - Integrante / Alexey Wolfson - Integrante / Guo-Cheng Yuan - Integrante.

Prêmios

2015

RJ Young Researcher (Jovem Cientista do Nosso Estado), Research Foundation of the State of Rio de Janeiro (FAPERJ).

2015

Productivity Grant (Bolsista de Produtividade do CNPq - Nível 2), National Counsel of Technological and Scientific Development (CNPq).

2011

Researcher Fellowship (Betriu de Pinos), Catalan Academic Research Foundation (AGAUR).

2007

Young Researcher Fellowship (Juan de la Cierva), Spanish Ministry of Science and Education (MEC).

2005

Postdoctoral Fellowship, German Academic Exchange Service (DAAD).

2003

PhD fellowship, Ernst Schering Research Foundation.

2002

Best Poster Award, American Society for Microbiology (ASM).

Histórico profissional

Endereço profissional

Universidade Federal do Rio de Janeiro, Instituto de Biofísica Carlos Chagas Filho. , CCS - Centro de Ciências da Saúde, Cidade Universitária, 21941902 - Rio de Janeiro, RJ - Brasil, Telefone: (21) 40424224, URL da Homepage:

Experiência profissional

2015 - Atual

Universidade Federal do Rio de Janeiro

Vínculo: Civil servant, Enquadramento Funcional: Profesor, Carga horária: 40, Regime: Dedicação exclusiva.

2013 - 2015

Laboratório Nacional de Computação Científica

Vínculo: Servidor Público, Enquadramento Funcional: Pesquisador, Carga horária: 40

2012 - 2013

Centre de Regulació Genòmica

Vínculo: Professor Visitante, Enquadramento Funcional: Pesquisador, Carga horária: 40, Regime: Dedicação exclusiva.

2008 - 2010

Centre de Regulació Genòmica

Vínculo: Bolsista, Enquadramento Funcional: Pesquisador jovem, Regime: Dedicação exclusiva.

Outras informações:
Bolsa: Juan de la Cierva

2005 - 2008

Centre de Regulació Genòmica

Vínculo: Scholarship, Enquadramento Funcional: Postdoc

Outras informações:
Fellowship of the German Academic Exchange Service (DAAD)

2010 - 2012

Centre Nacional d'Anàlisis Genòmica

Vínculo: , Enquadramento Funcional: Pesquisador, Regime: Dedicação exclusiva.

2007 - 2010

Universitat Politecnica de Catalunya

Vínculo: Colaborator, Enquadramento Funcional: Researcher

2003 - 2012

National Human Genome Research Institute

Vínculo: Colaborator, Enquadramento Funcional: Researcher

2005 - 2005

Universitat Pompeu Fabra

Vínculo: Visitor Professor, Enquadramento Funcional: Adjunct Professor

2002 - 2002

Julius-Maximilians-Universität Würzburg

Vínculo: Scholarship, Enquadramento Funcional: Internship

Outras informações:
JAVA programming for the Department of Computer Science 2

2000 - 2000

Bayer Ag

Vínculo: Scholarship, Enquadramento Funcional: Internship

Outras informações:
primer design for SNP pyrosequencing