David Singer

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Produções bibliográficas

• SINGER, DAVID ; METZ, SEBASTIAN ; UNREIN, FERNANDO ; SHIMANO, SATOSHI ; MAZEI, YURI ; MITCHELL, EDWARD A. D. ; LARA, ENRIQUE . Contrasted Micro-Eukaryotic Diversity Associated with Sphagnum Mosses in Tropical, Subtropical and Temperate Climatic Zones. MICROBIAL ECOLOGY , v. 00, p. 00, 2019.

• GRANATH, GUSTAF RYDIN, HÅKAN BALTZER, JENNIFER L. BENGTSSON, FIA BONCEK, NICHOLAS BRAGAZZA, LUCA BU, ZHAO-JUN CAPORN, SIMON J. M. DORREPAAL, ELLEN GALANINA, OLGA GA'KA, MARIUSZ GANEVA, ANNA GILLIKIN, DAVID P. GOIA, IRINA GONCHAROVA, NADEZHDA HÁJEK, MICHAL HARAGUCHI, AKIRA HARRIS, LORNA I. HUMPHREYS, ELYN JIROU?EK, MARTIN KAJUKA'O, KATARZYNA KAROFELD, EDGAR KORONATOVA, NATALIA G. KOSYKH, NATALIA P. LAMENTOWICZ, MARIUSZ , et al. LAPSHINA, ELENA LIMPENS, JUUL LINKOSALMI, MAIJU MA, JIN-ZE MAURITZ, MARGUERITE MUNIR, TARIQ M. NATALI, SUSAN M. NATCHEVA, RAYNA NOSKOVA, MARIA PAYNE, RICHARD J. PILKINGTON, KYLE ROBINSON, SEAN ROBROEK, BJORN J. M. ROCHEFORT, LINE SINGER, DAVID STENØIEN, HANS K. TUITTILA, EEVA-STIINA VELLAK, KAI VERHEYDEN, ANOUK WADDINGTON, JAMES MICHAEL RICE, STEVEN K. ; Environmental and taxonomic controls of carbon and oxygen stable isotope composition in Sphagnum across broad climatic and geographic ranges. BIOGEOSCIENCES , v. 15, p. 5189-5202, 2018.

• HEDě ; SINGER, DAVID ; LI, JIABAO ; YAO, MINJIE ; LIN, QIANG ; LI, HUAN ; KUKLA, JAROSLAV ; CAJTHAML, TOMÁ? ; FROUZC, JAN ; RUI, JUNPENG ; LI, XIANGZHEN . Effect of dry-rewetting stress on response pattern of soil prokaryotic communities in alpine meadow soil. APPLIED SOIL ECOLOGY , v. 126, p. 98-106, 2018.

• SZELECZ, ILDIKÓ ; LÖSCH, SANDRA ; SEPPEY, CHRISTOPHE V. W. ; LARA, ENRIQUE ; SINGER, DAVID ; SORGE, FRANZISKA ; TSCHUI, JOELLE ; PEROTTI, M. ALEJANDRA ; MITCHELL, EDWARD A. D. . Comparative analysis of bones, mites, soil chemistry, nematodes and soil micro-eukaryotes from a suspected homicide to estimate the post-mortem interval. Scientific Reports , v. 8, p. 25, 2018.

• SINGER, DAVID ; KOSAKYAN, ANUSH ; SEPPEY, CHRISTOPHE V. W. ; PILLONEL, AMANDINE ; FERNÁNDEZ, LEONARDO D. ; FONTANETO, DIEGO ; MITCHELL, EDWARD A. D. ; LARA, ENRIQUE . Environmental filtering and phylogenetic clustering correlate with the distribution patterns of cryptic protist species. ECOLOGY , v. 99, p. 904-914, 2018.

• DUCKERT, CLÉMENT ; BLANDENIER, QUENTIN ; KUPFERSCHMID, FANNY A.L. ; KOSAKYAN, ANUSH ; MITCHELL, EDWARD A.D. ; LARA, ENRIQUE ; SINGER, DAVID . En garde! Redefinition of Nebela militaris (Arcellinida, Hyalospheniidae) and erection of Alabasta gen. nov.. EUROPEAN JOURNAL OF PROTISTOLOGY , v. 66, p. 156-165, 2018.

• GEISEN, STEFAN ; MITCHELL, EDWARD A D ; ADL, SINA ; BONKOWSKI, MICHAEL ; DUNTHORN, MICAH ; EKELUND, FLEMMING ; FERNÁNDEZ, LEONARDO D ; JOUSSET, ALEXANDRE ; KRASHEVSKA, VALENTYNA ; SINGER, DAVID ; SPIEGEL, FREDERICK W ; WALOCHNIK, JULIA ; LARA, ENRIQUE . Soil protists: a fertile frontier in soil biology research. FEMS Microbiology Reviews , v. 42, p. 293-323, 2018.

• BLANDENIER, QUENTIN ; SEPPEY, CHRISTOPHE V. W. ; SINGER, DAVID ; VLIMANT, MICHÈLE ; SIMON, ANAËLE ; DUCKERT, CLÉMENT ; LARA, ENRIQUE . nov. gen., nov. sp., the First Cultured Member of the Environmental Dermamoebidae Clade LKM74 and its Unusual Life Cycle. JOURNAL OF EUKARYOTIC MICROBIOLOGY , v. 64, p. 257-265, 2017.

• MAHÉ, FRÉDÉRIC ; DE VARGAS, COLOMBAN ; BASS, DAVID ; CZECH, LUCAS ; STAMATAKIS, ALEXANDROS ; LARA, ENRIQUE ; SINGER, DAVID ; MAYOR, JORDAN ; BUNGE, JOHN ; SERNAKER, SARAH ; SIEMENSMEYER, TOBIAS ; TRAUTMANN, ISABELLE ; ROMAC, SARAH ; BERNEY, CÉDRIC ; KOZLOV, ALEXEY ; MITCHELL, EDWARD A. D. ; SEPPEY, CHRISTOPHE V. W. ; EGGE, ELIANNE ; LENTENDU, GUILLAUME ; WIRTH, RAINER ; TRUEBA, GABRIEL ; DUNTHORN, MICAH . Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests. Nature Ecology & Evolution , v. 1, p. 0091, 2017.

• GEISEN, STEFAN MITCHELL, EDWARD A.D. WILKINSON, DAVID M. ADL, SINA BONKOWSKI, MICHAEL BROWN, MATTHEW W. FIORE-DONNO, ANNA MARIA HEGER, THIERRY J. JASSEY, VINCENT E.J. KRASHEVSKA, VALENTYNA LAHR, DANIEL J.G. MARCISZ, KATARZYNA MULOT, MATTHIEU PAYNE, RICHARD SINGER, DAVID ANDERSON, O. ROGER CHARMAN, DAN J. EKELUND, FLEMMING GRIFFITHS, BRYAN S. RØNN, REGIN SMIRNOV, ALEXEY BASS, DAVID BELBAHRI, LASSAÂD BERNEY, CÉDRIC BLANDENIER, QUENTIN , et al. CHATZINOTAS, ANTONIS CLARHOLM, MARIANNE DUNTHORN, MICAH FEEST, ALAN FERNÁNDEZ, LEONARDO D. FOISSNER, WILHELM FOURNIER, BERTRAND GENTEKAKI, ELENI HÁJEK, MICHAL HELDER, JOHANNES JOUSSET, ALEXANDRE KOLLER, ROBERT KUMAR, SANTOSH LA TERZA, ANTONIETTA LAMENTOWICZ, MARIUSZ MAZEI, YURI SANTOS, SUSANA S. SEPPEY, CHRISTOPHE V.W. SPIEGEL, FREDERICK W. WALOCHNIK, JULIA WINDING, ANNE LARA, ENRIQUE ; Soil protistology rebooted: 30 fundamental questions to start with. SOIL BIOLOGY & BIOCHEMISTRY , v. 111, p. 94-103, 2017.

• SEPPEY, CHRISTOPHE V.W. ; SINGER, DAVID ; DUMACK, KENNETH ; FOURNIER, BERTRAND ; BELBAHRI, LASSAÂD ; MITCHELL, EDWARD A.D. ; LARA, ENRIQUE . Distribution patterns of soil microbial eukaryotes suggests widespread algivory by phagotrophic protists as an alternative pathway for nutrient cycling. SOIL BIOLOGY & BIOCHEMISTRY , v. 112, p. 68-76, 2017.

• SEPPEY, CHRISTOPHE V. W. ; FOURNIER, BERTRAND ; SZELECZ, ILDIKÒ ; SINGER, DAVID ; MITCHELL, EDWARD A. D. ; LARA, ENRIQUE . Response of forest soil euglyphid testate amoebae (Rhizaria: Cercozoa) to pig cadavers assessed by high-throughput sequencing. INTERNATIONAL JOURNAL OF LEGAL MEDICINE , v. 130, p. 551-562, 2016.

• SINGER, DAVID ; LARA, ENRIQUE ; STECIOW, MÓNICA M. ; SEPPEY, CHRISTOPHE V.W. ; PAREDES, NOELIA ; PILLONEL, AMANDINE ; OSZAKO, TOMASZ ; BELBAHRI, LASSÂAD . High-throughput sequencing reveals diverse oomycete communities in oligotrophic peat bog micro-habitat. Fungal Ecology , v. 23, p. 42-47, 2016.

• SCHIAFFINO, M. ROMINA ; LARA, ENRIQUE ; FERNÁNDEZ, LEONARDO D. ; BALAGUÉ, VANESSA ; SINGER, DAVID ; SEPPEY, CHRISTOPHE C. W. ; MASSANA, RAMON ; IZAGUIRRE, IRINA . Microbial eukaryote communities exhibit robust biogeographical patterns along a gradient of Patagonian and Antarctic lakes. ENVIRONMENTAL MICROBIOLOGY , v. 18, p. 5249-5264, 2016.

• SINGER, DAVID ; PILLONEL, AMANDINE ; MITCHELL, EDWARD A.D. ; LARA, ENRIQUE . Eight species in the Nebela collaris complex: Nebela gimlii (Arcellinida, Hyalospheniidae), a new species described from a Swiss raised bog. EUROPEAN JOURNAL OF PROTISTOLOGY , v. 51, p. 79-85, 2015.

• LARA, ENRIQUE ; SEPPEY, CHRISTOPHE V. W. ; GARRAZA, GABRIELA GONZÁLEZ ; SINGER, DAVID ; QUIROGA, MARIA VICTORIA ; MATALONI, GABRIELA . Planktonic eukaryote molecular diversity: discrimination of minerotrophic and ombrotrophic peatland pools in Tierra del Fuego (Argentina). JOURNAL OF PLANKTON RESEARCH , v. 37, p. 645-655, 2015.

Outras produções

Projetos de pesquisa

• 2019 - Atual

  From environmental metabarcoding/metatranscriptomic to a single-cell transcriptomics: evaluation of human impact on the microeukaryotic diversity of the Tietê River, Sao Paulo, Brazil., Descrição: Eukaryotic microbes (protists) play primordial roles in food webs in all ecosystems, but knowledge on their taxonomic and functional diversity is still patchy. Recent developments of high throughput sequencing (HTS) tools and especially metabarcoding make it possible to estimate the total organismal diversity from environmental DNA samples. As it is now possible to analyze simultaneously high numbers of samples we can also use HTS in fundamental and applied ecological research to determine patterns and environmental drivers of diversity, community structure and associated functions. In this project, my aim is to assess the impact of pollution on the freshwater protistan communities of the Tietê River (São Paolo, Brazil). This river is an ideal model to study human impact on ecosystem biodiversity, as it covers, over a relatively short geographical distance, the complete range from near pristine to massively polluted (industry and domestic waste) water. My focus is on all groups of protists, building on the expertise I developed in my PhD. I will first screen the diversity of all protists lineages by using a metabarcoding approach to characterize the taxonomic composition of communities along the river and correlate them to environmental factors (nutrient content, pH and pollutant). Concurrently in collaboration with Prof. Matthew Brown from Mississippi State University, I will use a metatranscriptomic approach to evaluate overall gene expression within the community. Finally, I will isolate, describe, and culture a selection of the most interesting candidate bioindicating taxa. I will expose these organisms to different conditions (e.g., pollutants and temperature) to determine genes expression patterns using single-cell transcriptomic approaches developed by Prof. Brown and Prof. Lahr at the University of São Paolo. The combination of these observational and experimental methods will expand my range of expertise and allow me to develop an integrative approach for the study of microeukaryotic diversity, a prerequisite needed for both fundamental (e.g. diversity and physiology) and applied (bioindication and water resource management) research on protists.. , Situação: Em andamento; Natureza: Pesquisa. , Integrantes: David Singer - Coordenador / LAHR, DANIEL J.G. - Integrante.

• 2016 - 2018

  Morphologic and genetic description of new cryptic species in the Nebela collarisspecies complex (Hyalospheniidae, Arcellinida), Situação: Concluído; Natureza: Pesquisa. , Integrantes: David Singer - Coordenador.

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