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2019 Sforça, Danilo Augusto ; VAUTRIN, SONIA ; CARDOSO-SILVA, CLAUDIO BENICIO ; MANCINI, MELINA CRISTINA ; ROMERO-DA CRUZ, MARÍA VICTORIA ; PEREIRA, GUILHERME DA SILVA ; CONTE, MÔNICA ; BELLEC, ARNAUD ; DAHMER, NAIR ; FOURMENT, JOELLE ; RODDE, NATHALIE ; SLUYS MAV. ; VICENTINI, RENATO ; GARCIA, ANTÔNIO AUGUSTO FRANCO ; FORNI-MARTINS, ELIANA REGINA ; CARNEIRO, MONALISA SAMPAIO ; HOFFMANN, HERMANN PAULO ; PINTO, Luciana Rossini ; LANDELL, MARCOS GUIMARÃES DE ANDRADE ; VINCENTZ, MICHEL ; BERGES, HELENE ; SOUZA, A. P. . Gene Duplication in the Sugarcane Genome: A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions. Frontiers in Plant Science , v. 10, p. 1-15, 2019.
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2019 BARROS-CARVALHO, GESIELE ALMEIDA ; HUNGRIA, MARIANGELA ; LOPES, FABRÍCIO MARTINS ; VAN SLUYS, MARIE-ANNE . Brazilian-adapted soybean Bradyrhizobium strains uncover IS elements with potential impact on biological nitrogen fixation. FEMS Microbiology Letters , v. 366, p. fnz046, 2019.
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2019 TAVARES, EVELINE Q P ; DE SOUZA, AMANDA P ; ROMIM, GRAYCE H ; GRANDIS, ADRIANA ; PLASENCIA, ANNA ; GAIARSA, JONAS W ; GRIMA-PETTENATI, JACQUELINE ; DE SETTA, NATHALIA ; Van Sluys, Marie-Anne ; BUCKERIDGE, MARCOS S . The control of endopolygalacturonase expression by the sugarcane RAV transcription factor during aerenchyma formation. JOURNAL OF EXPERIMENTAL BOTANY , v. 70, p. 497-506, 2019.
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2019 SOUZA, GLAUCIA MENDES VAN SLUYS, MARIE-ANNE LEMBKE, CAROLINA GIMILIANI LEE, HAYAN MARGARIDO, GABRIEL RODRIGUES ALVES HOTTA, CARLOS TAKESHI GAIARSA, JONAS WEISSMANN DINIZ, AUGUSTO LIMA OLIVEIRA, MAURO DE MEDEIROS FERREIRA, SÁVIO DE SIQUEIRA NISHIYAMA, MILTON YUTAKA TEN-CATEN, FELIPE RAGAGNIN, GEOVANI TOLFO ANDRADE, PABLO DE MORAIS DE SOUZA, ROBSON FRANCISCO NICASTRO, GIANLUCCA GONÇALVES PANDYA, RAVI KIM, CHANGSOO GUO, HUI DURHAM, ALAN MITCHELL CARNEIRO, MONALISA SAMPAIO ZHANG, JISEN ZHANG, XINGTAN ZHANG, QING MING, RAY , et al. Schatz, Michael C DAVIDSON, BOB PATERSON, ANDREW H HECKERMAN, DAVID ; Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GigaScience , v. 8, p. 1, 2019.
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2019 RODY, HUGO V. S. ; BOMBARDELLI, RENATO G. H. ; CRESTE, SILVANA ; CAMARGO, LUÍS E. A. ; Van Sluys, Marie-Anne ; MONTEIRO-VITORELLO, CLAUDIA B. . Genome survey of resistance gene analogs in sugarcane: genomic features and differential expression of the innate immune system from a smut-resistant genotype. BMC GENOMICS , v. 20, p. 809, 2019.
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2019 DA COSTA, ZIRLANE PORTUGAL ; CAUZ-SANTOS, LUIZ AUGUSTO ; RAGAGNIN, GEOVANI TOLFO ; Van Sluys, Marie-Anne ; DORNELAS, MARCELO CARNIER ; BERGES, HÉLÈNE ; DE MELLO VARANI, ALESSANDRO ; Vieira, Maria Lucia Carneiro . Transposable element discovery and characterization of LTR-retrotransposon evolutionary lineages in the tropical fruit species Passiflora edulis. MOLECULAR BIOLOGY REPORTS , v. 46, p. 6117, 2019.
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2019 HERNANDES'LOPES, JOSÉ ; SOUSA'BAENA, MARIANE S. ; LEMOS, RENATA C. C. ; CORRÊA, TATIANA C. S. ; VAN SLUYS, MARIE'ANNE ; MELO'DE'PINNA, GLADYS FLAVIA DE ALBUQUERQUE . Toward understanding inflorescence development and architecture in Passiflora : insights from comparative anatomy and expression of APETALA1 . AMERICAN JOURNAL OF BOTANY , v. 106, p. 1173, 2019.
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2018 ZHANG, JISEN ZHANG, XINGTAN Tang, Haibao ZHANG, QING HUA, XIUTING MA, XIAOKAI ZHU, FAN JONES, TYLER ZHU, XINGUANG Bowers, John WAI, CHING MAN ZHENG, CHUNFANG SHI, YAN CHEN, SHUAI XU, XIUMING YUE, JINGJING NELSON, DAVID R. HUANG, LIXIAN LI, ZHEN XU, HUIMIN ZHOU, DONG WANG, YONGJUN HU, WEICHANG LIN, JISHAN DENG, YOUJIN , et al. PANDEY, NEHA MANCINI, MELINA ZERPA, DESSIREÉ NGUYEN, JULIE K. WANG, LIMING YU, LIANG XIN, YINGHUI GE, LIANGFA ARRO, JIE HAN, JENNIFER O. CHAKRABARTY, SETU PUSHKO, MARIJA ZHANG, WENPING MA, YANHONG MA, PANPAN LV, MINGJU CHEN, FAMING ZHENG, GUANGYONG XU, JINGSHENG YANG, ZHENHUI DENG, FANG CHEN, XUEQUN LIAO, ZHENYANG ZHANG, XUNXIAO LIN, ZHICONG LIN, HAI YAN, HANSONG KUANG, ZHENG ZHONG, WEIMIN LIANG, PINGPING WANG, GUOFENG YUAN, YUAN SHI, JIAXIAN HOU, JINXIANG LIN, JINGXIAN JIN, JINGJING CAO, PEIJIAN SHEN, QIAOCHU JIANG, QING ZHOU, PING MA, YAYING ZHANG, XIAODAN XU, RONGRONG LIU, JUAN ZHOU, YONGMEI JIA, HAIFENG MA, QING QI, RUI ZHANG, ZHILIANG FANG, JINGPING FANG, HONGKUN SONG, JINJIN WANG, MENGJUAN DONG, GUANGRUI WANG, GANG CHEN, ZHENG MA, TENG LIU, HONG DHUNGANA, SINGHA R. HUSS, SARAH E. YANG, XIPING SHARMA, ANUPMA TRUJILLO, JHON H. MARTINEZ, MARIA C. HUDSON, MATTHEW RIASCOS, JOHN J. SCHULER, MARY CHEN, LI-QING BRAUN, DAVID M. LI, LEI Yu, Qingyi Wang, Jianping WANG, KAI SCHATZ, MICHAEL C. HECKERMAN, DAVID Van Sluys, Marie-Anne SOUZA, GLAUCIA MENDES MOORE, PAUL H. SANKOFF, DAVID VANBUREN, ROBERT PATERSON, ANDREW H. NAGAI, CHIFUMI MING, RAY ; Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.. NATURE GENETICS , v. 50, p. 1754, 2018.
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2018 LEWIN, HARRIS A. ; ROBINSON, GENE E. ; KRESS, W. JOHN ; BAKER, WILLIAM J. ; CODDINGTON, JONATHAN ; CRANDALL, KEITH A. ; DURBIN, RICHARD ; EDWARDS, SCOTT V. ; FOREST, FÉLIX ; GILBERT, M. THOMAS P. ; GOLDSTEIN, MELISSA M. ; GRIGORIEV, IGOR V. ; HACKETT, KEVIN J. ; HAUSSLER, DAVID ; JARVIS, ERICH D. ; JOHNSON, WARREN E. ; PATRINOS, ARISTIDES ; RICHARDS, STEPHEN ; CASTILLA-RUBIO, JUAN CARLOS ; Van Sluys, Marie-Anne ; SOLTIS, PAMELA S. ; XU, XUN ; YANG, HUANMING ; ZHANG, GUOJIE . Earth BioGenome Project: Sequencing life for the future of life. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA , v. 115, p. 4325-4333, 2018.
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2018 Garsmeur, Olivier DROC, GAETAN ANTONISE, RUDIE GRIMWOOD, JANE POTIER, BERNARD AITKEN, KAREN JENKINS, JERRY MARTIN, GUILLAUME Charron, Carine HERVOUET, CATHERINE COSTET, LAURENT YAHIAOUI, NABILA HEALEY, ADAM SIMS, DAVID CHERUKURI, YESESRI SREEDASYAM, AVINASH KILIAN, ANDRZEJ CHAN, AGNES Van Sluys, Marie-Anne SWAMINATHAN, KANKSHITA TOWN, CHRISTOPHER BERGÈS, HÉLÈNE SIMMONS, BLAKE GLASZMANN, JEAN CHRISTOPHE VAN DER VOSSEN, EDWIN , et al. HENRY, ROBERT SCHMUTZ, JEREMY D?HONT, ANGÉLIQUE ; A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nature Communications , v. 9, p. 2638, 2018.
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2017 NAGEL, RAIMUND ; TURRINI, PAULA C. G. ; NETT, RYAN S. ; Leach, Jan E. ; VERDIER, VALÉRIE ; Van Sluys, Marie-Anne ; PETERS, REUBEN J. . An operon for production of bioactive gibberellin A 4 phytohormone with wide distribution in the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola . NEW PHYTOLOGIST , v. 214, p. 1-7, 2017.
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2017 BARROS-CARVALHO, GESIELE ALMEIDA ; Van Sluys, Marie-Anne ; LOPES, FABRICIO MARTINS . An Efficient Approach to Explore and Discriminate Anomalous Regions in Bacterial Genomes Based on Maximum Entropy. JOURNAL OF COMPUTATIONAL BIOLOGY , v. xxx, p. xxx-xxx, 2017.
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2017 MILLER, ROBERT NEIL GERARD ; COSTA ALVES, GABRIEL SERGIO ; Van Sluys, Marie-Anne . Plant immunity: unravelling the complexity of plant responses to biotic stresses. ANNALS OF BOTANY , v. 119, p. 681-687, 2017.
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2017 VILELA, MARIANE DE MENDONÇA ; DEL-BEM, LUIZ-EDUARDO ; Van Sluys, Marie-Anne ; DE SETTA, NATHALIA ; KITAJIMA, JOÃO PAULO ; CRUZ, GUILHERME MARCELO QUEIROGA ; SFORÇA, DANILO AUGUSTO ; DE SOUZA, ANETE PEREIRA ; FERREIRA, PAULO CAVALCANTI GOMES ; GRATIVOL, CLÍCIA ; CARDOSO-SILVA, CLAUDIO BENICIO ; Vicentini, Renato ; VINCENTZ, Michel . Analysis of three sugarcane homo/homeologous regions suggests independent polyploidization events of Saccharum officinarum and Saccharum spontaneum . Genome Biology and Evolution , v. 9, p. evw293-278, 2017.
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2017 FIRETTI, FABIANA ; ZUNTINI, ALEXANDRE RIZZO ; GAIARSA, JONAS WEISMANN ; OLIVEIRA, RENATA SOUZA ; LOHMANN, LÚCIA G. ; Van Sluys, Marie-Anne . Complete chloroplast genome sequences contribute to plant species delimitation: A case study of the Anemopaegma species complex. AMERICAN JOURNAL OF BOTANY , v. 104, p. 1493-1509, 2017.
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2016 OCHOA CRUZ, EDGAR ANDRES ; CRUZ, GUILHERME MARCELLO QUEIROGA ; VIEIRA, ANDRÉIA PRATA ; Van Sluys, Marie-Anne . Virus-like attachment sites as structural landmarks of plants retrotransposons. Mobile DNA , v. 7, p. 14, 2016.
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2016 MEDEIROS, AMANDA L. ; FURTADO, CRISTIANE M. ; LEITE, FRANCINALDO S. ; SOUTO, VALESKA S. ; DE SETTA, NATHALIA ; Van Sluys, Marie-Anne ; KITAJIMA, JOÃO PAULO ; COSTA, ANA PAULA P. ; BENEDITO, VAGNER A. ; SCORTECCI, KATIA C. . Molecular Genetic Dissection of Sugarcane Flowering under Equatorial Field Conditions. Tropical Plant Biology , v. 9, p. 252-266, 2016.
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2016 MIES, MIGUEL ; Van Sluys, M. A. ; METCALFE, C. J. ; SUMIDA, P. Y. G. . Molecular evidence of symbiotic activity between Symbiodinium and Tridacna maxima larvae. Symbiosis , v. 70, p. 1-10, 2016.
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2016 SCHAKER, PATRICIA D. C. ; PALHARES, A. C. ; TANIGUTI, LUCAS M. ; PETERS, LEILA P. ; CRESTE, SILVANA ; AITKEN, KAREN S. ; SLUYS MAV. ; KITAJIMA, JOÃO P. ; VIEIRA, MARIA L. C. ; MONTEIRO-VITORELLO, CLAUDIA B. . RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Disease. Plos One , v. 11, p. e0162237, 2016.
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2015 METCALFE, CUSHLA J. ; OLIVEIRA, SARAH G. ; GAIARSA, JONAS W. ; AITKEN, KAREN S. ; CARNEIRO, MONALISA S. ; ZATTI, FERNANDA ; Van Sluys, Marie-Anne . Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcane. Journal of Experimental Botany , v. 66, p. 4239-4250, 2015.
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2015 SOUZA, GLAUCIA MENDES VICTORIA, R. L. VERDADE, L. M. JOLY, C. A. NETTO, P. E. A. CRUZ, C. H. B. CANTARELLA, H. CHUM, H. CORTEZ, L. A. B. DIAZ-CHAVEZ, R. FERNANDES, E. FINCHER, G. FINCHER, G. B. GOLDEMBERG, J. NOGUEIRA, L. A. H. HUNTLEY, B. J. JOHNSON, F. X. KAFFKA, S. KARP, A. LEAL, M. R. L. V. LONG, S. P. LYNDT, L. R. MACEDO, I. C. MACIEL FILHO, R. NASSAR, A. M. , et al. NIGRO, F. B. OSSEWEIJER, P. RICHARD, T. L. SADDLER, J. N. SAMSETH, J. SEEBALUCK, V. SOMMERVILLE, C. WIELEN, L. V. D. SLUYS, MARIE-ANNE VAN WOODS, J. YOUNGS, H. ; SCOPE Bioenergy and Sustainability Technical Summary. Bioenergy and Sustainability bridging the gaps , v. 72, p. 1-779, 2015.
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2014 Cruz, Guilherme M. Q. ; METCALFE, CUSHLA J. ; de Setta, Nathalia ; CRUZ, EDGAR A. O. ; VIEIRA, ANDRÉIA PRATA ; MEDINA, ROSARIO ; Van Sluys, Marie-Anne . Virus-Like Attachment Sites and Plastic CpG Islands: Landmarks of Diversity in Plant Del Retrotransposons. Plos One , v. 9, p. e97099, 2014.
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2014 de Setta, Nathalia MONTEIRO-VITORELLO, CLÁUDIA BARROS METCALFE, CUSHLA JANE CRUZ, GUILHERME MARCELO DEL BEM, LUIZ EDUARDO Vicentini, Renato NOGUEIRA, FÁBIO TEBALDI CAMPOS, ROBERTA ALVARES NUNES, SIDENY LIMA TURRINI, PAULA CRISTINA VIEIRA, ANDREIA PRATA OCHOA CRUZ, EDGAR ANDRÉS CORRÊA, TATIANA CAROLINE HOTTA, CARLOS TAKESHI de Mello Varani, Alessandro VAUTRIN, SONIA DA TRINDADE, ADILSON SILVA DE MENDONÇA VILELA, MARIANE LEMBKE, CAROLINA GIMILIANI SATO, PALOMA MIEKO DE ANDRADE, RODRIGO FANDINO NISHIYAMA, MILTON YUTAKA CARDOSO-SILVA, CLAUDIO BENICIO SCORTECCI, KATIA CASTANHO GARCIA, ANTÔNIO AUGUSTO , et al. CARNEIRO, MONALISA SAMPAIO KIM, CHANGSOO Paterson, Andrew H BERGÈS, HÉLÈNE D'HONT, ANGÉLIQUE DE SOUZA, ANETE PEREIRA SOUZA, GLAUCIA MENDES VINCENTZ, Michel KITAJIMA, JOÃO PAULO Van Sluys, Marie-Anne ; Building the sugarcane genome for biotechnology and identifying evolutionary trends. BMC GENOMICS , v. 15, p. 540, 2014.
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2013 VARANI, A. M. ; MONTEIRO-VITORELLO, C. B. ; NAKAYA, H. I. ; VANSLUYS MA . The Role of Prophage in Plant Pathogenic Bacteria. Annual Review of Phytopathology (Print) , v. 51, p. 429, 2013.
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2013 DARRASSE, ARMELLE CARRÈRE, SÉBASTIEN BARBE, VALÉRIE BOUREAU, TRISTAN ARRIETA-ORTIZ, MARIO L BONNEAU, SOPHIE BRIAND, MARTIAL BRIN, CHRYSTELLE COCIANCICH, STÉPHANE DURAND, KARINE FOUTEAU, STÉPHANIE GAGNEVIN, LIONEL GUÉRIN, FABIEN GUY, ENDRICK INDIANA, ARNAUD Koebnik, Ralf LAUBER, EMMANUELLE MUNOZ, ALEJANDRA NOËL, LAURENT D PIERETTI, ISABELLE POUSSIER, STÉPHANE PRUVOST, OLIVIER ROBÈNE-SOUSTRADE, ISABELLE ROTT, PHILIPPE ROYER, MONIQUE , et al. SERRES-GIARDI, LAURANA Szurek, Boris Van Sluys, Marie-Anne VERDIER, VALÉRIE VERNIÈRE, CHRISTIAN ARLAT, MATTHIEU MANCEAU, CHARLES JACQUES, MARIE-AGNÈS ; Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. BMC Genomics , v. 14, p. 761, 2013.
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2013 MONTEIRO-VITORELLO, C.B. ; MONTEIRO-VITORELLO, C. B. ; ZERILLO, M. M. ; ZERILLO, M.M. ; VAN SLUYS, M.A. ; VAN SLUYS, M.-A. ; CAMARGO, L. E. A. ; CAMARGO, L.E.A. ; KITAJIMA, J.P. ; KITAJIMA, J. P. . Complete Genome Sequence of Leifsonia xyli subsp. cynodontis Strain DSM46306, a Gram-Positive Bacterial Pathogen of Grasses. Genome Announcements , v. 1, p. e00915-13-e00915-13, 2013.
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2013 GARCIA, ANTONIO A. F. Mollinari, Marcelo Marconi, Thiago G. SERANG, OLIVER R. SILVA, RENATO R. VIEIRA, MARIA L. C. Vicentini, Renato COSTA, ESTELA A. MANCINI, MELINA C. GARCIA, MELISSA O. S. PASTINA, MARIA M. Gazaffi, Rodrigo MARTINS, ELIANA R. F. DAHMER, NAIR SFORÇA, DANILO A. SILVA, CLAUDIO B. C. BUNDOCK, PETER HENRY, ROBERT J. Souza, Glaucia M. Van Sluys, Marie-Anne LANDELL, MARCOS G. A. CARNEIRO, MONALISA S. VINCENTZ, MICHEL A. G. PINTO, LUCIANA R. VENCOVSKY, ROLAND , et al. Souza, Anete P. ; SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids. Scientific Reports , v. 3, p. 3399, 2013.
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2012 Palhares, Alessandra C Palhares, Alessandra C Palhares, Alessandra C Rodrigues-Morais, Taislene B Van Sluys, Marie-Anne Domingues, Douglas S Maccheroni, Walter Jordão, Hamilton Souza, Anete P Marconi, Thiago G Mollinari, Marcelo Gazaffi, Rodrigo Garcia, Antonio Augusto F Vieira, Maria Lucia Carneiro Rodrigues-Morais, Taislene B Mollinari, Marcelo Jordão, Hamilton Van Sluys, Marie-Anne Domingues, Douglas S Gazaffi, Rodrigo Garcia, Antonio Augusto F Maccheroni, Walter Souza, Anete P Vieira, Maria Lucia Carneiro Marconi, Thiago G , et al. Rodrigues-Morais, Taislene B Mollinari, Marcelo Maccheroni, Walter Souza, Anete P Domingues, Douglas S Garcia, Antonio Augusto F Gazaffi, Rodrigo Vieira, Maria Lucia Carneiro Jordão, Hamilton Van Sluys, Marie-Anne Marconi, Thiago G ; A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers. BMC Genetics (Online) , v. 13, p. 51, 2012.
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2012 VICENTINI, R. ; NOGUEIRA, F. T. S. ; Vincentz, M. ; BEM, L. E. V. ; SLUYS, M. A. . Gene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAs. Tropical Plant Biology (Online) , v. 1, p. 1, 2012.
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2012 KAJIHARA, D. ; Godoy F ; Hamaji TA ; BLANCO, S. R. ; VANSLUYS, M A ; ROSSI, M. . Functional characterization of sugarcane mustang domesticated transposases and comparative diversity in sugarcane, rice, maize and sorghum. Genetics and Molecular Biology (Impresso) , v. 35, p. 632-639, 2012.
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2012 Varani, Alessandro M. ; MONTEIRO-VITORELLO, CLAUDIA B. ; ALMEIDA, LUIZ G.P. DE ; SOUZA, RANGEL C. ; CUNHA, OBERDAN L. ; Lima, Wanessa C. ; Civerolo, Edwin ; SLUYS, MARIE-ANNE VAN ; VASCONCELOS, ANA T.R. . Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains. Genetics and Molecular Biology (Impresso) , v. 35, p. 149-152, 2012.
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2012 JOLY, C. A. ; BERLINCK, R. G. S. ; BOLZANI, V. S. ; HADDAD, C. F. B. ; OLIVEIRA, M. C. ; SLUYS MAV. ; SOUZA, G. M. ; VERDADE, L. M. ; VICTORIA, R. L. . Principais conclusões do workshop conjunto dos programas FAPESP BIOTA-BIOEN-Mudanças Climáticas: ciência e políticas públicas para uma economia mais verde, no contexto da RIO+20. Biota Neotropica (Edição em Português. Online) , v. 12(2), p. 19-21, 2012.
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2012 Domingues, Douglas S ; Cruz, Guilherme MQ ; Metcalfe, Cushla J ; Nogueira, Fabio TS ; Vicentini, Renato ; de S Alves, Cristiane ; Van Sluys, Marie-Anne . Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns. BMC GENOMICS , v. 13, p. 137, 2012.
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2012 Manetti, M. E. ; ROSSI, M. ; CRUZ, G. M. Q. ; SACCARO, N. L. ; NAKABASHI, M. ; ALTEBARMAKIAN, V. ; RODIER-GOUD, M. ; DOMINGUES, D. ; D?HONT, A. ; SLUYS, M. A. . Mutator System Derivatives Isolated from Sugarcane Genome Sequence. Tropical Plant Biology , v. 5, p. 233-243, 2012.
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2012 Jesus, Erika M. ; Ochoa Cruz, Edgar A. ; Cruz, Guilherme M. Q. ; Van Sluys, Marie-Anne . Diversification of hAT transposase paralogues in the sugarcane genome. MOLECULAR GENETICS AND GENOMICS , v. 287, p. 205-219, 2012.
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2011 Setta, Nathalia ; Sluys, Marie-Anne ; Capy, Pierre ; Carareto, Claudia Marcia Aparecida . Copia Retrotransposon in the Zaprionus Genus: Another Case of Transposable Element Sharing with the Drosophila melanogaster Subgroup. Journal of Molecular Evolution , v. 72, p. 326-338, 2011.
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2011 Garsmeur, Olivier ; Charron, Carine ; Bocs, Stéphanie ; Jouffe, Vincent ; Samain, Sylvie ; Couloux, Arnaud ; Droc, Gaëtan ; Zini, Cyrille ; Glaszmann, Jean-Christophe ; Van Sluys, Marie-Anne ; D Hont, Angélique . High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. New Phytologist (Print) , v. 189, p. 629-642, 2011.
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2011 Ryan, Robert P. ; Vorhölter, Frank-Jörg ; Potnis, Neha ; Jones, Jeffrey B. ; Van Sluys, Marie-Anne ; Bogdanove, Adam J. ; Dow, J. Maxwell . Pathogenomics of Xanthomonas: understanding bacterium plant interactions. Nature Review, Microbiology (Print) , v. 9, p. 344-355, 2011.
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2011 Bogdanove, A. J. Koebnik, R. Lu, H. Furutani, A. Angiuoli, S. V. Patil, P. B. Van Sluys, M.-A. Ryan, R. P. Meyer, D. F. Han, S.-W. Aparna, G. Rajaram, M. Delcher, A. L. Phillippy, A. M. Puiu, D. Schatz, M. C. Shumway, M. Sommer, D. D. Trapnell, C. Benahmed, F. Dimitrov, G. Madupu, R. Radune, D. Sullivan, S. Jha, G. , et al. Ishihara, H. Lee, S.-W. Pandey, A. Sharma, V. Sriariyanun, M. Szurek, B. Vera-Cruz, C. M. Dorman, K. S. Ronald, P. C. Verdier, V. Dow, J. M. Sonti, R. V. Tsuge, S. Brendel, V. Rabinowicz, P. D. ; Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.. Journal of Bacteriology (Print) , v. 193, p. 5450-5464, 2011.
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2011 SOUZA, GLAUCIA MENDES ; BERGES, HELENE ; BOCS, STEPHANIE ; CASU, ROSANNE ; D'HONT, ANGELIQUE ; FERREIRA, JOÃO EDUARDO ; HENRY, ROBERT ; Ming, Ray ; POTIER, BERNARD ; Sluys, Marie-Anne ; VINCENTZ, Michel ; PATERSON, ANDREW H. . The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome. Tropical Plant Biology (Online) , v. 4, p. 145-156, 2011.
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2010 Freschi, L. ; Rodrigues, M. A. ; Domingues, D. S. ; Purgatto, E. ; Van Sluys, M. A. ; Magalhaes, J. R. ; Kaiser, W. M. ; Mercier, H. . Nitric Oxide Mediates the Hormonal Control of Crassulacean Acid Metabolism Expression in Young Pineapple Plants. Plant Physiology (Bethesda) , v. 152, p. 1971-1985, 2010.
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2010 Kamenetzky, L. ; Asis, R. ; Bassi, S. ; de Godoy, F. ; Bermudez, L. ; Fernie, A. R. ; Van Sluys, M. A. ; Vrebalov, J. ; Giovannoni, J. J. ; ROSSI, M. ; Carrari, F. . Genomic Analysis of Wild Tomato Introgressions Determining Metabolism- and Yield-Associated Traits. Plant Physiology (Bethesda) , v. 152, p. 1772-1786, 2010.
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2010 Wang, Jianping ; Roe, Bruce ; Macmil, Simone ; Yu, Qingyi ; Murray, Jan ; Tang, Haibao ; Chen, Cuixia ; Najar, Fares ; Wiley, Graham ; Bowers, John ; Van Sluys, Marie-Anne ; Rokhsar, Daniel S ; Hudson, Matthew E ; Moose, Stephen P ; Paterson, Andrew H ; Ming, Ray . Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. BMC Genomics , v. 11, p. 261, 2010.
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2010 Lang, Jillian M. ; Hamilton, John P. ; Diaz, Maria Genaleen Q. ; Van Sluys, Marie Anne ; Burgos, Ma. Ruby G. ; Vera Cruz, Casiana M. ; Buell, C. Robin ; Tisserat, Ned A. ; Leach, Jan E. . Genomics-Based Diagnostic Marker Development for pv. and pv.. Plant Disease , v. 94, p. 311-319, 2010.
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2010 Souza, Beatriz M. ; Molfetta-Machado, Jeanne B. ; Freschi, Luciano ; Figueira, Antonio ; Purgatto, Eduardo ; Buckeridge, Marcos S. ; Sluys, Marie-Anne ; Mercier, Helenice . Axillary bud development in pineapple nodal segments correlates with changes on cell cycle gene expression, hormone level, and sucrose and glutamate contents. In Vitro Cellular & Developmental Biology. Plant , v. 46, p. 281-288, 2010.
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2010 Hotta, Carlos T. ; Souza, Amanda P. ; Margarido, Gabriel R. A. ; Sluys, Marie-Anne ; GARCIA, ANTôNIO A. F. ; Domingues, Douglas S. ; Mollinari, Marcelo ; Ochoa, Edgar A. ; Carrer, Helaine ; Melotto-Passarin, Danila M. ; Hoshino, Andrea A. ; Souza, Glaucia M. ; Santos, Melissa O. ; Menossi, Marcelo ; Souza, Anete P. ; Santos, Wanderley D. ; Marconi, Thiago G. ; CRIVELLARI, AUGUSTO CéSAR ; Buckeridge, Marcos S. ; Cruz, Guilherme M. Q. ; Lembke, Carolina G. . The Biotechnology Roadmap for Sugarcane Improvement. Tropical Plant Biology (Online) , v. 3, p. 75-87, 2010.
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2009 Manetti, M. E. ; ROSSI, M. ; NAKABASHI, M. ; GRANDBASTIEN, M. A. ; Sluys, Marie Anne . The Tnt1 family member Retrosol copy number and structure disclose retrotransposon diversification in different Solanum species. Molecular Genetics and Genomics , v. 281, p. 261-271, 2009.
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2009 de Setta, Nathalia ; Van Sluys, Marie-Anne ; Capy, Pierre ; Carareto, Claudia MA . Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila. BMC Evolutionary Biology (Online) , v. 9, p. 279, 2009.
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2009 Freschi, Luciano ; Nievola, Catarina Carvalho ; Rodrigues, Maria Aurineide ; DOMINGUES, Douglas Silva ; Van Sluys, Marie-Anne ; Mercier, Helenice . Thermoperiod affects the diurnal cycle of nitrate reductase expression and activity in pineapple plants by modulating the endogenous levels of cytokinins. Physiologia plantarum (Kobenhavn. 1948) , v. 137, p. 201-212, 2009.
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2008 LIMA, W. ; PAQUOLA, A. C. ; VARANI, A. M. ; VANSLUYS MA ; MENCK, C. F. M. . Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism.. FEMS Microbiology Letters , v. 281, p. 87-97, 2008.
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2008 Zerillo, Marcelo M ; VAN SLUYS, M A ; Camargo, Luis ; Monteiro-Vitorello, Claudia B . Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli. BMC Microbiology (Online) , v. 8, p. 127, 2008.
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2008 Bermudez, L. ; Urias, U. ; Milstein, D. ; Kamenetzky, L. ; Asis, R. ; Fernie, A. R. ; VAN SLUYS, M A ; Carrari, F. ; ROSSI, M. . A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. Journal of Experimental Botany , v. 59, p. 2875-2890, 2008.
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2008 MENOSSI, M. ; SILVA-FILHO, M. C. ; Vincentz, M. ; Van-Sluys, M.-A. ; Souza, G. M. . Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development, v. 2008, p. 1-12, 2008.
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2008 Salzberg, Steven L Sommer, Daniel D Schatz, Michael C Phillippy, Adam M Rabinowicz, Pablo D Tsuge, Seiji Furutani, Ayako Ochiai, Hirokazu Delcher, Arthur L Kelley, David Madupu, Ramana Puiu, Daniela Radune, Diana Shumway, Martin Trapnell, Cole Aparna, Gudlur Jha, Gopaljee Pandey, Alok Patil, Prabhu B Ishihara, Hiromichi Meyer, Damien F Szurek, Boris Verdier, Valerie Koebnik, Ralf Dow, J Maxwell , et al. Ryan, Robert P Hirata, Hisae Tsuyumu, Shinji Won Lee, Sang Ronald, Pamela C Sonti, Ramesh V Van Sluys, Marie-Anne Leach, Jan E White, Frank F Bogdanove, Adam J ; Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics , v. 9, p. 204, 2008.
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2008 de Mello Varani, Alessandro ; Souza, Rangel Celso ; Nakaya, Helder I. ; de Lima, Wanessa Cristina ; Paula de Almeida, Luiz Gonzaga ; Kitajima, Elliot Watanabe ; Chen, Jianchi ; Civerolo, Edwin ; Vasconcelos, Ana Tereza Ribeiro ; Van Sluys, Marie-Anne . Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation, v. 3, p. e4059, 2008.
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2008 Lu, Hong ; Patil, Prabhu ; Van Sluys, Marie-Anne ; White, Frank F. ; Ryan, Robert P. ; Dow, J. Maxwell ; Rabinowicz, Pablo ; Salzberg, Steven L. ; Leach, Jan E. ; Sonti, Ramesh ; Brendel, Volker ; Bogdanove, Adam J. . Acquisition and Evolution of Plant Pathogenesis Associated Gene Clusters and Candidate Determinants of Tissue-Specificity in Xanthomonas, v. 3, p. e3828, 2008.
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2007 SETTA, N. ; COSTA, A. P. P. ; Lopes FR ; SLUYS MAV. ; CARARETO, C. M. . Transposon Display supports transpositional activity of P element in species of the saltans group of Drosophila. Journal of Genetics , v. 86, p. 37-43, 2007.
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2007 MANETTI, Maria Elisa ; ROSSI, M. ; COSTA, A. P. P. ; Clausen AM ; SLUYS MAV. . Radiation of the Tnt1 retrotransposon superfamily in three Solanaceae genera.. BMC Evolutionary Biology (Online) , v. 7, p. 34, 2007.
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2007 Gonçalves EG ; Mayo SJ ; SLUYS MAV. ; Salatino A . Combined genotypic-phenotypic phylogeny of the tribe Spathicarpeae (Araceae) with reference to independent events of invasion to Andean regions.. Molecular Phylogenetics and Evolution , v. jan, p. in press, 2007.
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2006 MARQUES, D. A. ; FOGLIO, M. A. ; MORGANTE, P. G. ; SLUYS MAV. ; SHEPHERD, S. L. K. . Biotechnology approaches for production of antiulcerogenic dihydro-epideoxyarteannin B isolated from Artemisia annua L.. Revista Brasileira de Farmacognosia , v. 16, p. 291-299, 2006.
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2006 GODOI, P. ; GALHARDO, R. ; LUCHE, D. D. ; SLUYS MAV. ; MENCK, C. F. M. ; OLIVA, G. . Structure of the Thiazole Biosynthetic Enzyme THI1 from Arabidopsis thaliana. The Journal of Biological Chemistry , v. 281, p. online, 2006.
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2006 SACCARO-JUNIOR, N. L. ; SLUYS MAV. ; VARANI, A. M. ; ROSSI, M. . MudrA-like sequences from rice and sugarcane cluster as two bona fide transposon clades and two domesticated transposases.. Gene (Amsterdam) , v. 6, p. in press, 2006.
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2006 Reis LF ; SLUYS MAV. ; Garrat RC ; Pereira HM ; Teixeira MM . GMOs: building the future on the basis of past experience. Anais da Academia Brasileira de Ciências , v. 78, p. 667-686, 2006.
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2006 PACHECO, F. H. T. ; SILVA-STENICO, M. E. ; SILVA, D. M. ; Van Sluys, M. A. . Characterization of Agrobacterium tumefaciens Strains Isolated from Brazilian Plant Species. American Journal of Plant Physiology , v. 2, p. 142-150, 2006.
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2005 GRANDBASTIEN, M. A. ; AUDEON, C. ; BONNIVARD, E. ; CASACUCERTA, J. M. ; CHALHOUB, B. ; COSTA, A. P. P. ; et al ; SLUYS MAV. ; MIHRI, C. . Stress Activation And Genomic Impact Of Tnt1 Retrotransposons In Solanaceae. Cytogenetic and Genome Research , v. 110, n.1-4, p. 229-241, 2005.
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2005 MORGANTE, P. G. ; BERRA, C. ; NAKABASHI, M. ; COSTA, R. ; MENCK, C. F. M. ; SLUYS MAV. . Functional XPB/RAD25 redundancy in Arabidopsis genome: characterization of AtXPB2 and expression analysis.. Gene (Amsterdam) , Holanda, v. 344, p. 93-103, 2005.
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2005 CHEN, J. ; CIVEROLO, E. L. ; SLUYS MAV. ; OLIVEIRA, M. C. . Genetic Discovery in Xylella fastidiosa Through Sequence Analysis of Selected Randomly Amplified Polymorphic DNAs. Current Microbiology , v. 50, n.2, p. 78-83, 2005.
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2005 RIBEIRO, D. ; FARIAS, L. P. ; ALMEIDA, J. D. ; KASHIWABARA, P. M. ; RIBEIRO, A. F. C. ; SILVA FILHO, M. C. ; MENCK, C. F. M. ; SLUYS MAV. . Functional characterization of the thi1 promoter region from Arabidopsis thaliana. Journal of Experimental Botany , v. 56, n.417, p. 1797-1804, 2005.
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2005 MONTEIROVITORELLO, C B ; OLIVEIRA, Mariana Cabral de ; ZERILLO, M. M. ; VARANI, A. M. ; CIVEROLO, E. L. ; SLUYS MAV. . Xylella and Xanthomonas mobil`omics. Journal of Integrative Biology / Omics (Larchmont) , v. 9, n.2, p. 146-159, 2005.
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2005 LIMA, W. ; SLUYS MAV. ; MENCK, C. F. M. . Non-gamma-proteobacteria gene islands contribute to the Xanthomonas genome. Journal of Integrative Biology / Omics (Larchmont) , v. 9, n.2, p. 160-172, 2005.
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2005 ARAÚJO, P. G. ; ROSSI, M. ; JESUS, Erika Maria de ; SACCARO-JUNIOR, N. L. ; KAJIHARA, D. ; et al ; CHABREGAS, S. M. ; ULIAN, E. C. ; MENOSSI, M. ; SLUYS MAV. . Transcriptionally active transposable elements in recent hybrid sugarcane.. Plant Journal , v. 44, n.5, p. 707-717, 2005.
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2004 NASCIMENTO, Ana Lúcia ; VERJOSKI-ALMEIDA, Sergio ; SLUYS MAV. ; MONTEIROVITORELLO, C B ; CAMARGO, L E A ; DIGIAMPIETRI, La ; HARSTKEERL, Rudy A ; HO, Pl ; MARQUES, Marilis V ; OLIVEIRA, Mariana Cabral de ; SETUBAL, João Carlos ; HAAKE, David A ; MARTINS, Elizabeth A . Genome features of Leptospira interrogans serovar Copenhageni.. Brazilian Journal of Medical and Biological Research , v. 37, n.4, p. 459-477, 2004.
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2004 NASCIMENTO, Ana Lúcia ; KO, Albert ; MARTINS, Elizabeth A ; MONTEIROVITORELLO, C B ; HO, P L ; et al ; SLUYS MAV. . Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis.. Journal of Bacteriology , v. 186, n.7, p. 2164-2172, 2004.
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2004 VINCENTZ, Michel ; CARA, F A ; OKURA, V K ; SILVA, F R da ; et al ; SLUYS MAV. ; NOBREGA, Francisco Gorgonio da ; ARRUDA, Paulo ; MENCK, Carlos Frederico Martins . Evaluation of monocot and eudicot divergence using the sugarcane transcriptome.. Plant Physiology (Bethesda) , v. 134, n.3, p. 951-959, 2004.
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2004 ROSSI, M. ; ARAÚJO, P. G. ; JESUS, Erika Maria de ; VARANI, A. M. ; SLUYS MAV. . Comparative analysis of sugarcane Mutator-like transposases. Molecular Genetics and Genomics , v. 272, p. 194-203, 2004.
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2004 MONTEIROVITORELLO, C B ; CAMARGO, L E A ; SLUYS MAV. ; KITAJIMA, J. P. ; TRUFFI, D. ; AMARAL, A. M. ; et al ; SETUBAL, J. C. . The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli. Molecular Plant-Microbe Interactions , v. 17, n.8, p. 827-836, 2004.